Listening on http://127.0.0.1:45541

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-04-19 16:07:19.583487 | timeMax: 2024-06-18 16:07:19.584074 | timeDiff: 5184000.00058794
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 432
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
nrow dataFiltered(): 208
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-04-19 14:07:19.58349 | timeMax: 2024-06-18 14:07:19.58407 | timeDiff: 5184000.00058007
nFacets: 1
nrow dataFiltered(): 208
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 432
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-04-19 14:07:19.583 | timeMax: 2024-06-18 14:07:19.584 | timeDiff: 5184000.00100017
nFacets: 1
nrow dataFiltered(): 208
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 432
using 'ggh4x' package ...
NA
NA
nFacets: 3
nrow dataFiltered(): 494
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
nrow dataFiltered(): 396
using 'ggh4x' package ...
p35135/Proteomics/LUMOS_2/analytic_20240612/20240612_C35135_009_autoQC03dda.raw
NA
p35135/Proteomics/LUMOS_2/analytic_20240612/20240612_C35135_009_autoQC03dda.raw
NA
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1568
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-04-19 17:09:08.60333 | timeMax: 2024-06-18 17:09:08.603929 | timeDiff: 5184000.00059843
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 432
using 'ggh4x' package ...
nrow dataFiltered(): 208
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-04-19 15:09:08.60333 | timeMax: 2024-06-18 15:09:08.60393 | timeDiff: 5184000.00059986
nFacets: 1
nrow dataFiltered(): 208
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 432
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-04-19 15:09:08.603 | timeMax: 2024-06-18 15:09:08.604 | timeDiff: 5184000.00100017
nFacets: 1
nrow dataFiltered(): 208
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 432
using 'ggh4x' package ...
NA
nrow dataFiltered(): 208
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 351
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 216
using 'ggh4x' package ...
nrow dataFiltered(): 351
using 'ggh4x' package ...
nrow dataFiltered(): 351
using 'ggh4x' package ...
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1472
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values (`geom_point()`).
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-04-20 14:42:43.379853 | timeMax: 2024-06-19 14:42:43.380415 | timeDiff: 5184000.00056148
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1360
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1360
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-04-20 12:42:43.38 | timeMax: 2024-06-19 12:42:43.38 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1568
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
nFacets: 3
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 396
using 'ggh4x' package ...
nrow dataFiltered(): 494
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
NA
p35504/Proteomics/LUMOS_2/analytic_20240618/20240618_C35504_009_autoQC03dia.raw
nrow dataFiltered(): 396
using 'ggh4x' package ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-04-20 14:52:45.698997 | timeMax: 2024-06-19 14:52:45.699567 | timeDiff: 5184000.00056958
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1360
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-04-20 12:52:45.699 | timeMax: 2024-06-19 12:52:45.7 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1360
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).


Execution halted