Listening on http://127.0.0.1:43973

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-04-21 12:24:32.13258 | timeMax: 2024-06-20 12:24:32.13317 | timeDiff: 5184000.00058985
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1392
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-04-21 10:24:32.133 | timeMax: 2024-06-20 10:24:32.133 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1392
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1600
using 'ggh4x' package ...
Warning: Removed 77 rows containing missing values (`geom_point()`).
Warning: Removed 6 rows containing missing values (`geom_line()`).
NA
p35498/Proteomics/QEXACTIVE_1/analytic_20240619/20240619_C35498_004_autoQC01.raw
NA
nrow dataFiltered(): 1600
using 'ggh4x' package ...
Warning: Removed 154 rows containing missing values (`geom_point()`).
Warning: Removed 6 rows containing missing values (`geom_line()`).
p35498/Proteomics/QEXACTIVE_1/analytic_20240619/20240619_C35498_004_autoQC01.raw
NA
p35498/Proteomics/QEXACTIVE_1/analytic_20240619/20240619_C35498_004_autoQC01.raw
NA
p35387/Proteomics/QEXACTIVE_1/analytic_20240612/20240612_C35387_001_autoQC01.raw
p35387/Proteomics/QEXACTIVE_1/analytic_20240612/20240612_C35387_001_autoQC01.raw
p35387/Proteomics/QEXACTIVE_1/analytic_20240612/20240612_C35387_001_autoQC01.raw
NA
p35387/Proteomics/QEXACTIVE_1/analytic_20240612/20240612_C35387_004_autoQC01.raw
p35442/Proteomics/QEXACTIVE_1/analytic_20240613/20240613_C35442_004_autoQC01.raw
NA
p35306/Proteomics/QEXACTIVE_1/analytic_20240613/20240613_C35306_010_autoQC01.raw
NA
p35258/Proteomics/QEXACTIVE_1/analytic_20240521/20240521_C35258_001_autoQC01.raw
p3000/Proteomics/QEXACTIVE_1/analytic_20240521/20240521_C3000_002_autoQC01.raw
NA
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 364
using 'ggh4x' package ...
NA
nrow dataFiltered(): 364
using 'ggh4x' package ...
p35498/Proteomics/QEXACTIVE_1/analytic_20240619/20240619_C35498_005_autoQC03dda.raw
NA
nrow dataFiltered(): 364
using 'ggh4x' package ...
nrow dataFiltered(): 364
using 'ggh4x' package ...
nrow dataFiltered(): 364
using 'ggh4x' package ...
nrow dataFiltered(): 364
using 'ggh4x' package ...
nrow dataFiltered(): 364
using 'ggh4x' package ...
nrow dataFiltered(): 364
using 'ggh4x' package ...


Execution halted