Listening on http://127.0.0.1:33805 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-22 08:52:26.901553 | timeMax: 2024-06-21 08:52:26.902137 | timeDiff: 5184000.00058389 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-04-22 06:52:26.902 | timeMax: 2024-06-21 06:52:26.902 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 0 nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 414 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... p29033/Proteomics/TIMSTOF_1/radhika_20240208_primyotubes_DIA_DDA_/zip/20240208_071_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p29033/Proteomics/TIMSTOF_1/radhika_20240208_primyotubes_DIA_DDA_/zip/20240208_071_autoQC03dia.d.zip p29033/Proteomics/TIMSTOF_1/radhika_20240208_primyotubes_DIA_DDA_/zip/20240208_041_autoQC03dia.d.zip NA nFacets: 1 nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nrow dataFiltered(): 432 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-22 08:56:20.713468 | timeMax: 2024-06-21 08:56:20.714046 | timeDiff: 5184000.00057745 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 432 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-22 06:56:20.71347 | timeMax: 2024-06-21 06:56:20.71405 | timeDiff: 5184000.00058007 nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 432 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-22 06:56:20.713 | timeMax: 2024-06-21 06:56:20.714 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 432 using 'ggh4x' package ... NA NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240617/20240617_005_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_20240617/20240617_005_autoQC03dia.raw nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-24 13:38:44.087615 | timeMax: 2024-06-23 13:38:44.088182 | timeDiff: 5184000.0005672 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-24 11:38:44.088 | timeMax: 2024-06-23 11:38:44.088 | timeDiff: 5184000 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-25 14:44:27.491053 | timeMax: 2024-06-24 14:44:27.491642 | timeDiff: 5184000.00058866 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 182 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-25 12:44:27.49105 | timeMax: 2024-06-24 12:44:27.49164 | timeDiff: 5184000.00058985 nFacets: 1 nrow dataFiltered(): 182 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-25 12:44:27.491 | timeMax: 2024-06-24 12:44:27.492 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 182 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240624/20240624_003_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/analytic_20240624/20240624_004_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240624/20240624_004_autoQC03dia.raw nrow dataFiltered(): 414 using 'ggh4x' package ... NA vals$rawrr: TRUE nrow dataFiltered(): 414 using 'ggh4x' package ... Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240624/20240624_004_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/EXPLORIS_2/analytic_20240624/20240624_004_autoQC03dia.raw plotClick: Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-25 14:57:11.156779 | timeMax: 2024-06-24 14:57:11.15754 | timeDiff: 5184000.00076151 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 182 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-25 12:57:11.15678 | timeMax: 2024-06-24 12:57:11.15754 | timeDiff: 5184000.00076008 nFacets: 1 nrow dataFiltered(): 182 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-25 12:57:11.157 | timeMax: 2024-06-24 12:57:11.158 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 182 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240624/20240624_003_autoQC03dda.raw nFacets: 1 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... NA nrow dataFiltered(): 364 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/lkunz_20240624/20240624_002_autoQC03dda.raw input timeRange: 7776000 | timeMin: 2024-06-05 12:57:13.624 | timeMax: 2024-06-24 12:57:11.158 | timeDiff: 1641597.53399992 nFacets: 1 nrow dataFiltered(): 130 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 NA nrow dataFiltered(): 130 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/lkunz_20240624/20240624_002_autoQC03dda_rep.raw nrow dataFiltered(): 130 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_1/lkunz_20240624/20240624_002_autoQC03dda_rep.raw input timeRange: 7776000 | timeMin: 2024-05-10 12:57:43.961 | timeMax: 2024-06-24 12:57:11.158 | timeDiff: 3887967.19700003 nFacets: 1 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... NA nFacets: 1 nrow dataFiltered(): 117 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 117 using 'ggh4x' package ... nrow dataFiltered(): 117 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... nrow dataFiltered(): 90 using 'ggh4x' package ... Execution halted Warning messages: 1: agg could not write to the given file 2: agg could not write to the given file 3: agg could not write to the given file 4: agg could not write to the given file 5: agg could not write to the given file