Listening on http://127.0.0.1:41255

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-04-28 07:53:05.93096 | timeMax: 2024-06-27 07:53:05.931558 | timeDiff: 5184000.00059819
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1360
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-04-28 05:53:05.931 | timeMax: 2024-06-27 05:53:05.932 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1360
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1472
using 'ggh4x' package ...
Warning: Removed 64 rows containing missing values (`geom_point()`).
Warning: Removed 8 rows containing missing values (`geom_line()`).
NA
p35622/Proteomics/QEXACTIVE_1/analytic_20240626/20240626_C35622_004_autoQC01.raw
NA
p35622/Proteomics/QEXACTIVE_1/analytic_20240626/20240626_C35622_004_autoQC01.raw
nrow dataFiltered(): 1472
using 'ggh4x' package ...
Warning: Removed 128 rows containing missing values (`geom_point()`).
Warning: Removed 8 rows containing missing values (`geom_line()`).
NA
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 364
using 'ggh4x' package ...
NA
nrow dataFiltered(): 364
using 'ggh4x' package ...
nrow dataFiltered(): 364
using 'ggh4x' package ...
nrow dataFiltered(): 364
using 'ggh4x' package ...
p35567/Proteomics/QEXACTIVE_1/analytic_20240621/20240621_C35567_005_autoQC03dda.raw
NA
p35595/Proteomics/QEXACTIVE_1/analytic_20240625/20240625_C35595_016_autoQC03dda.raw
p35622/Proteomics/QEXACTIVE_1/analytic_20240626/20240626_C35622_005_autoQC03dda.raw
p35595/Proteomics/QEXACTIVE_1/analytic_20240625/20240625_C35595_016_autoQC03dda.raw
p35622/Proteomics/QEXACTIVE_1/analytic_20240626/20240626_C35622_005_autoQC03dda.raw
p35622/Proteomics/QEXACTIVE_1/analytic_20240626/20240626_C35622_004_autoQC01.raw
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-04-28 09:18:29.597074 | timeMax: 2024-06-27 09:18:29.597651 | timeDiff: 5184000.00057697
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1360
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-04-28 07:18:29.597 | timeMax: 2024-06-27 07:18:29.598 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1360
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 414
using 'ggh4x' package ...
nrow dataFiltered(): 182
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 351
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 216
using 'ggh4x' package ...
nrow dataFiltered(): 351
using 'ggh4x' package ...


Execution halted