Listening on http://127.0.0.1:45747

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-04-29 14:28:49.921431 | timeMax: 2024-06-28 14:28:49.922087 | timeDiff: 5184000.0006566
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1344
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

    guide_axis_logticks

using 'ggh4x' package ...
Warning: Removed 1 row containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-04-29 12:28:49.921 | timeMax: 2024-06-28 12:28:49.922 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1344
using 'ggh4x' package ...
Warning: Removed 1 row containing missing values or values outside the scale
range (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1504
using 'ggh4x' package ...
Warning: Removed 65 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning: Removed 8 rows containing missing values or values outside the scale
range (`geom_line()`).
NA
p35651/Proteomics/QEXACTIVE_1/analytic_20240628/20240628_C35651_004_autoQC01.raw
p35651/Proteomics/QEXACTIVE_1/analytic_20240628/20240628_C35651_004_autoQC01.raw
p35651/Proteomics/QEXACTIVE_1/analytic_20240628/20240628_C35651_001_autoQC01.raw
p35651/Proteomics/QEXACTIVE_1/analytic_20240628/20240628_C35651_004_autoQC01.raw
NA
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 364
using 'ggh4x' package ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-04-29 14:58:46.460084 | timeMax: 2024-06-28 14:58:46.460698 | timeDiff: 5184000.00061393
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1344
using 'ggh4x' package ...
Warning: Removed 1 row containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-04-29 12:58:46.46 | timeMax: 2024-06-28 12:58:46.461 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1344
using 'ggh4x' package ...
Warning: Removed 1 row containing missing values or values outside the scale
range (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1488
using 'ggh4x' package ...
Warning: Removed 26 rows containing missing values or values outside the scale
range (`geom_point()`).
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
autoQC01 module APEX wide nrow: 272712
autoQC01 module APEX long nrow: 1008
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 6 rows containing missing values or values outside the scale
range (`geom_point()`).
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 414
using 'ggh4x' package ...
nrow dataFiltered(): 182
using 'ggh4x' package ...
NA
input timeRange: 15552000 | timeMin: 2024-04-29 12:58:46.46 | timeMax: 2024-06-28 14:59:23.215121 | timeDiff: 5184036.75512123
nFacets: 1
nrow dataFiltered(): 182
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 414
using 'ggh4x' package ...
input timeRange: 15552000 | timeMin: 2024-04-29 12:58:46.46 | timeMax: 2024-06-28 12:59:23.215 | timeDiff: 5184036.75499988
nFacets: 1
nrow dataFiltered(): 182
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 414
using 'ggh4x' package ...
input timeRange: 15552000 | timeMin: 2024-01-19 12:59:24.447 | timeMax: 2024-06-28 12:59:23.215 | timeDiff: 13910398.7679999
nFacets: 1
nrow dataFiltered(): 663
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 1260
using 'ggh4x' package ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-04-29 15:00:39.580858 | timeMax: 2024-06-28 15:00:39.581443 | timeDiff: 5184000.00058508
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nrow dataFiltered(): 663
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 3696
using 'ggh4x' package ...
Warning: Removed 15 rows containing missing values or values outside the scale
range (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 3232
using 'ggh4x' package ...
Warning: Removed 5 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-02-10 13:01:53.955 | timeMax: 2024-06-28 12:59:23.215 | timeDiff: 12009449.26
autoQC01 module APEX long nrow: 2424
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 22 rows containing missing values or values outside the scale
range (`geom_point()`).
NA


Execution halted