Listening on http://127.0.0.1:34963

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-05-02 10:01:25.551377 | timeMax: 2024-07-01 10:01:25.551959 | timeDiff: 5184000.00058198
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 4
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 162
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

    guide_axis_logticks

using 'ggh4x' package ...
nrow dataFiltered(): 1144
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-05-02 08:01:25.55138 | timeMax: 2024-07-01 08:01:25.55196 | timeDiff: 5184000.00058007
nFacets: 4
nrow dataFiltered(): 1144
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 162
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-05-02 08:01:25.551 | timeMax: 2024-07-01 08:01:25.552 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1144
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 162
using 'ggh4x' package ...
NA
NA
plotClick: 
fn has changed to /srv/www/htdocs//NA
p35555/Proteomics/FUSION_2/mmasek_20240627_test_cyto_mem_prep_inlcusion/20240627_009_autoQC03dia.raw
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-05-02 14:17:58.007568 | timeMax: 2024-07-01 14:17:58.008146 | timeDiff: 5184000.00057793
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 396
using 'ggh4x' package ...
nrow dataFiltered(): 182
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-05-02 12:17:58.00757 | timeMax: 2024-07-01 12:17:58.00815 | timeDiff: 5184000.00057983
nFacets: 1
nrow dataFiltered(): 182
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 396
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-05-02 12:17:58.008 | timeMax: 2024-07-01 12:17:58.008 | timeDiff: 5184000
nFacets: 1
nrow dataFiltered(): 182
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 396
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 338
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 216
using 'ggh4x' package ...
p3000/Proteomics/EXPLORIS_1/lkunz_20240701/20240701_002_autoQC03dda.raw
nrow dataFiltered(): 338
using 'ggh4x' package ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-05-02 16:28:08.719031 | timeMax: 2024-07-01 16:28:08.719605 | timeDiff: 5184000.00057411
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1312
using 'ggh4x' package ...
Warning: Removed 1 row containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-05-02 14:28:08.719 | timeMax: 2024-07-01 14:28:08.72 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1312
using 'ggh4x' package ...
Warning: Removed 1 row containing missing values or values outside the scale
range (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1344
using 'ggh4x' package ...
Warning: Removed 54 rows containing missing values or values outside the scale
range (`geom_point()`).
NA
p35660/Proteomics/QEXACTIVE_1/analytic_20240701/20240701_C35660_001_autoQC01.raw
NA
p35660/Proteomics/QEXACTIVE_1/analytic_20240701/20240701_C35660_001_autoQC01.raw
NA
nFacets: 4
nrow dataFiltered(): 1312
using 'ggh4x' package ...
Warning: Removed 1 row containing missing values or values outside the scale
range (`geom_point()`).
p35593/Proteomics/EXPLORIS_2/analytic_20240701/20240701_C35593_001_autoQC01.raw
p35593/Proteomics/EXPLORIS_2/analytic_20240701/20240701_C35593_016_autoQC01.raw
NA
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 396
using 'ggh4x' package ...
nrow dataFiltered(): 195
using 'ggh4x' package ...
p35593/Proteomics/EXPLORIS_2/analytic_20240701/20240701_C35593_002_autoQC03dda.raw
p35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_008_autoQC03dia.raw
NA


Execution halted