Listening on http://127.0.0.1:33583 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-03 11:36:41.872248 | timeMax: 2024-07-02 11:36:41.872932 | timeDiff: 5184000.0006845 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-03 09:36:41.872 | timeMax: 2024-07-02 09:36:41.873 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1328 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1600 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). NA p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240701_006_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw NA p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw plotClick: plotClick: plotClick: p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw NA p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw plotClick: plotClick: vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-03 16:38:21.0239 | timeMax: 2024-07-02 16:38:21.024461 | timeDiff: 5184000.000561 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-05-03 14:38:21.024 | timeMax: 2024-07-02 14:38:21.024 | timeDiff: 5184000 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). p35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_007_autoQC01.raw vals$rawrr: TRUE p35532/Proteomics/EXPLORIS_2/analytic_20240625/20240625_C35532_001_autoQC01.raw NA p35553/Proteomics/EXPLORIS_2/analytic_20240626/20240626_C35553_001_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... p35272/Proteomics/LUMOS_1/analytic_20240617/20240617_C35272_006_autoQC01.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_05_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_05_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_05_autoQC01.raw Plotting chromatograms ... Read 22032 items NA plotClick: p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_05_autoQC01.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_05_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_01_autoQC01.raw NA nFacets: 4 nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw NA p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw NA p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240701_006_autoQC01.raw NA p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw NA p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw NA p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotTools 1: runApp NA p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240701_006_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw NA p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240701_001_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw NA p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw NA p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw NA vals$rawrr: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. vals$rawDiag: FALSE Warning in observe() : timeDiff is higher than timeRange plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240701_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240701_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240701_001_autoQC01.raw Plotting chromatograms ... Read 22032 items plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw Plotting chromatograms ... Read 22032 items p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw Plotting chromatograms ... Read 22032 items Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw Plotting chromatograms ... Read 22032 items Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw Plotting chromatograms ... Read 22032 items NA Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... nFacets: 4 nrow dataFiltered(): 0 Plotting chromatograms ... nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240625/20240625_001_autoQC01_2.raw NA nFacets: 4 nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). p3000/Proteomics/LUMOS_2/analytics_20240514/20240514_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240514/20240514_001_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240514/20240514_001_autoQC01.raw Plotting chromatograms ... p35429/Proteomics/LUMOS_2/analytic_20240606/20240607_C35429_001_autoQC01rep.raw p3000/Proteomics/LUMOS_2/analytics_20240610/20240610_001_autoQC01.raw p35429/Proteomics/LUMOS_2/analytic_20240606/20240607_C35429_001_autoQC01rep.raw plotClick: fn has changed to /srv/www/htdocs//p35429/Proteomics/LUMOS_2/analytic_20240606/20240607_C35429_001_autoQC01rep.raw Read 22032 items Reading raw file: /srv/www/htdocs//p35429/Proteomics/LUMOS_2/analytic_20240606/20240607_C35429_001_autoQC01rep.raw Plotting chromatograms ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning in observe() : timeDiff is higher than timeRange input timeRange: 1209600 | timeMin: 2024-06-25 17:19:26.576502 | timeMax: 2024-07-02 17:19:26.576524 | timeDiff: 604800.000022173 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 96 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-06-25 15:19:26.577 | timeMax: 2024-07-02 15:19:26.577 | timeDiff: 604800 nFacets: 4 nrow dataFiltered(): 96 using 'ggh4x' package ... NA p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw plotClick: fn has changed to /srv/www/htdocs//NA NA plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw NA plotClick: p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw NA p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw plotClick: p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw plotClick: p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw plotClick: plotClick: NA plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw plotClick: plotClick: plotClick: vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw Plotting chromatograms ... Read 22032 items p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw Plotting chromatograms ... Read 22032 items p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw Plotting chromatograms ... Read 22032 items fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-04 12:35:09.385228 | timeMax: 2024-07-03 12:35:09.385787 | timeDiff: 5184000.00055909 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 378 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-04 10:35:09.38523 | timeMax: 2024-07-03 10:35:09.38579 | timeDiff: 5184000.00056005 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 378 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-04 10:35:09.385 | timeMax: 2024-07-03 10:35:09.386 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 378 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... NA nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 378 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240701/20240701_002_autoQC03dda.raw p35593/Proteomics/EXPLORIS_2/analytic_20240701/20240701_C35593_002_autoQC03dda.raw NA nrow dataFiltered(): 378 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//NA plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-05 09:56:21.334565 | timeMax: 2024-07-04 09:56:21.335123 | timeDiff: 5184000.00055766 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-05 07:56:21.335 | timeMax: 2024-07-04 07:56:21.335 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values or values outside the scale range (`geom_point()`). NA nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 106 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 2 rows containing missing values or values outside the scale range (`geom_line()`). nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 53 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 2 rows containing missing values or values outside the scale range (`geom_line()`). nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 106 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 2 rows containing missing values or values outside the scale range (`geom_line()`). p35693/Proteomics/QEXACTIVE_1/analytic_20240703/20240703_C35693_006_autoQC01.raw p35693/Proteomics/QEXACTIVE_1/analytic_20240703/20240703_C35693_001_autoQC01.raw p35616/Proteomics/QEXACTIVE_1/analytic_20240702/20240702_C35616_001_autoQC01_20240702174456.raw p35693/Proteomics/QEXACTIVE_1/analytic_20240703/20240703_C35693_001_autoQC01.raw p35693/Proteomics/QEXACTIVE_1/analytic_20240703/20240703_C35693_001_autoQC01.raw p35693/Proteomics/QEXACTIVE_1/analytic_20240703/20240703_C35693_006_autoQC01.raw p35693/Proteomics/QEXACTIVE_1/analytic_20240703/20240703_C35693_006_autoQC01.raw p35693/Proteomics/QEXACTIVE_1/analytic_20240703/20240703_C35693_006_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 377 using 'ggh4x' package ... NA nrow dataFiltered(): 377 using 'ggh4x' package ... p35693/Proteomics/QEXACTIVE_1/analytic_20240703/20240703_C35693_007_autoQC03dda.raw NA p35616/Proteomics/QEXACTIVE_1/analytic_20240703/20240703_C35616_002_autoQC03dda.raw p3000/Proteomics/QEXACTIVE_1/analytic_20240702/20240702_C3000_003_autoQC03dda.raw p35616/Proteomics/QEXACTIVE_1/analytic_20240703/20240703_C35616_002_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-05 14:00:36.485593 | timeMax: 2024-07-04 14:00:36.486398 | timeDiff: 5184000.0008049 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 378 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-05 12:00:36.48559 | timeMax: 2024-07-04 12:00:36.4864 | timeDiff: 5184000.00080991 nFacets: 1 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 378 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-05 12:00:36.486 | timeMax: 2024-07-04 12:00:36.486 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 378 using 'ggh4x' package ... NA p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_001_autoQC03dda.raw NA p35532/Proteomics/EXPLORIS_2/analytic_20240702/20240702_C35532_028_autoQC03dda.raw p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_001_autoQC03dda.raw p35532/Proteomics/EXPLORIS_2/analytic_20240702/20240702_C35532_028_autoQC03dda.raw NA p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_001_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_001_autoQC03dda.raw nrow dataFiltered(): 260 using 'ggh4x' package ... NA p35532/Proteomics/EXPLORIS_2/analytic_20240702/20240702_C35532_028_autoQC03dda.raw NA nrow dataFiltered(): 260 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-05 14:05:31.278346 | timeMax: 2024-07-04 14:05:31.279063 | timeDiff: 5184000.00071621 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 378 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-05 12:05:31.27835 | timeMax: 2024-07-04 12:05:31.27906 | timeDiff: 5184000.00071001 nFacets: 1 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 378 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-05 12:05:31.278 | timeMax: 2024-07-04 12:05:31.279 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 378 using 'ggh4x' package ... NA vals$rawrr: TRUE vals$rawDiag: TRUE plotClick: fn has changed to /srv/www/htdocs//p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_001_autoQC03dda.raw p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_001_autoQC03dda.raw plotChargeState Reading raw file: /srv/www/htdocs//p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_001_autoQC03dda.raw Plotting chromatograms ... Read 22032 items Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-rawDiag-autoQC03-plot 1: runApp reading index for 20240704_C35532_001_autoQC03dda.raw... Reading raw file: /srv/www/htdocs//p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_001_autoQC03dda.raw Plotting chromatograms ... Read 22032 items Reading raw file: /srv/www/htdocs//p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_001_autoQC03dda.raw Plotting chromatograms ... Read 22032 items vals$rawDiag: FALSE NA plotClick: fn has changed to /srv/www/htdocs//p35532/Proteomics/EXPLORIS_2/analytic_20240702/20240702_C35532_028_autoQC03dda.raw Reading raw file: /srv/www/htdocs//p35532/Proteomics/EXPLORIS_2/analytic_20240702/20240702_C35532_028_autoQC03dda.raw Plotting chromatograms ... Read 22032 items p35532/Proteomics/EXPLORIS_2/analytic_20240702/20240702_C35532_028_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-05 14:32:35.030508 | timeMax: 2024-07-04 14:32:35.031759 | timeDiff: 5184000.00125074 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-05 12:32:35.031 | timeMax: 2024-07-04 12:32:35.032 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). vals$rawrr: TRUE p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_002_autoQC01.raw NA p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_002_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_002_autoQC01.raw Reading raw file: /srv/www/htdocs//p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_002_autoQC01.raw Plotting chromatograms ... Read 22032 items Reading raw file: /srv/www/htdocs//p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_002_autoQC01.raw Plotting chromatograms ... Read 22032 items Reading raw file: /srv/www/htdocs//p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_002_autoQC01.raw Plotting chromatograms ... Read 22032 items fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-05 15:11:46.0991 | timeMax: 2024-07-04 15:11:46.100442 | timeDiff: 5184000.00134254 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 378 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-05 13:11:46.0991 | timeMax: 2024-07-04 13:11:46.10044 | timeDiff: 5184000.00133991 nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 378 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-05 13:11:46.099 | timeMax: 2024-07-04 13:11:46.1 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 378 using 'ggh4x' package ... p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_001_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-05 15:51:39.999192 | timeMax: 2024-07-04 15:51:40.000178 | timeDiff: 5184000.00098634 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 378 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-05 13:51:39.99919 | timeMax: 2024-07-04 13:51:40.00018 | timeDiff: 5184000.00099015 nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 378 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-05 13:51:39.999 | timeMax: 2024-07-04 13:51:40 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 378 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-05 13:51:39.999 | timeMax: 2024-06-03 13:51:43.44 | timeDiff: 2505603.44099998 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-05 13:51:39.999 | timeMax: 2024-05-29 13:51:53.147 | timeDiff: 2073613.148 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... NA nrow dataFiltered(): 52 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_004_autoQC03dda.raw NA nrow dataFiltered(): 180 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_003_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240510/20240510_008_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240510/20240510_008_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_003_autoQC03dia.raw NA p35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_010_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_004_autoQC03dda.raw NA nrow dataFiltered(): 52 using 'ggh4x' package ... nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... nrow dataFiltered(): 180 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... NA p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_018_autoQC03dia.raw p33927/Proteomics/EXPLORIS_1/analytic_20240508/20240508_C33927_006_autoQC03dia.raw p3000/Proteomics/EXPLORIS_1/lkunz_20240506/20240506_003_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_1/lkunz_20240506/20240506_003_autoQC03dda.raw NA p33927/Proteomics/EXPLORIS_1/analytic_20240508/20240508_C33927_006_autoQC03dia.raw nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 162 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-06 12:10:02.921807 | timeMax: 2024-07-05 12:10:02.922386 | timeDiff: 5184000.00057936 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 3 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2024-05-06 10:10:02.92181 | timeMax: 2024-07-05 10:10:02.92239 | timeDiff: 5184000.00057983 nFacets: 3 nrow dataFiltered(): 572 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-06 10:10:02.922 | timeMax: 2024-07-05 10:10:02.922 | timeDiff: 5184000 nFacets: 3 nrow dataFiltered(): 572 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240701_005_autoQC03dia_newBatch.raw p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240701_005_autoQC03dia_newBatch.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-07 09:01:28.214601 | timeMax: 2024-07-06 09:01:28.215173 | timeDiff: 5184000.00057244 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-07 07:01:28.215 | timeMax: 2024-07-06 07:01:28.215 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 54 using 'ggh4x' package ... nrow dataFiltered(): 54 using 'ggh4x' package ... nrow dataFiltered(): 54 using 'ggh4x' package ... nrow dataFiltered(): 54 using 'ggh4x' package ... nrow dataFiltered(): 54 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-07 12:27:33.978067 | timeMax: 2024-07-06 12:27:33.979164 | timeDiff: 5184000.00109673 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-07 10:27:33.978 | timeMax: 2024-07-06 10:27:33.979 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 816 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 988 using 'ggh4x' package ... NA p35555/Proteomics/FUSION_2/mmasek_20240627_test_cyto_mem_prep_inlcusion/20240627_009_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-07 12:34:21.923152 | timeMax: 2024-07-06 12:34:21.924369 | timeDiff: 5184000.00121713 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-05-07 10:34:21.923 | timeMax: 2024-07-06 10:34:21.924 | timeDiff: 5184000.00099993 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-07 12:34:29.144964 | timeMax: 2024-07-06 12:34:29.145904 | timeDiff: 5184000.00094032 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-07 10:34:29.14496 | timeMax: 2024-07-06 10:34:29.1459 | timeDiff: 5184000.00094008 nFacets: 4 nrow dataFiltered(): 728 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-07 10:34:29.145 | timeMax: 2024-07-06 10:34:29.146 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 728 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240705_03_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240705_03_autoQC03dia.raw plotClick: plotClick: plotClick: NA plotClick: fn has changed to /srv/www/htdocs//NA NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240705_04_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240705_04_autoQC03dda.raw plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-07 14:41:16.173895 | timeMax: 2024-07-06 14:41:16.174606 | timeDiff: 5184000.00071073 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 378 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-07 12:41:16.1739 | timeMax: 2024-07-06 12:41:16.17461 | timeDiff: 5184000.00071025 nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 378 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-07 12:41:16.174 | timeMax: 2024-07-06 12:41:16.175 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 378 using 'ggh4x' package ... NA