Listening on http://127.0.0.1:38243 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-17 17:07:50.218334 | timeMax: 2024-07-16 17:07:50.219118 | timeDiff: 5184000.00078416 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-17 15:07:50.218 | timeMax: 2024-07-16 15:07:50.219 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1312 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 274153 autoQC01 module APEX long nrow: 984 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 8 rows containing missing values or values outside the scale range (`geom_point()`). autoQC01 module APEX long nrow: 1296 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p3000/Proteomics/LUMOS_2/analytics_20240716_autoQC/20240716_002_autoQC03dda_rep.raw NA NA p3000/Proteomics/LUMOS_2/analytics_20240716_autoQC/20240716_003_autoQC03dia.raw p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240715_003_autoQC03dia.raw p3000/Proteomics/LUMOS_2/analytics_20240716_autoQC/20240716_003_autoQC03dia.raw NA nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 p35765/Proteomics/QEXACTIVE_1/analytic_20240716/20240716_C35765_007_autoQC03dda.raw Execution halted