Listening on http://127.0.0.1:35543

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-05-30 16:30:50.474557 | timeMax: 2024-07-29 16:30:50.475142 | timeDiff: 5184000.00058484
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 342
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

    guide_axis_logticks

using 'ggh4x' package ...
nrow dataFiltered(): 338
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-05-30 14:30:50.47456 | timeMax: 2024-07-29 14:30:50.47514 | timeDiff: 5184000.00057983
nFacets: 1
nrow dataFiltered(): 338
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 342
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-05-30 14:30:50.475 | timeMax: 2024-07-29 14:30:50.475 | timeDiff: 5184000
nFacets: 1
nrow dataFiltered(): 338
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 342
using 'ggh4x' package ...
p3000/Proteomics/EXPLORIS_2/lkunz_20240729/20240729_003_autoQC03dda.raw
nrow dataFiltered(): 338
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 325
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 108
using 'ggh4x' package ...
nrow dataFiltered(): 325
using 'ggh4x' package ...
nrow dataFiltered(): 325
using 'ggh4x' package ...
NA
nrow dataFiltered(): 108
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 338
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 342
using 'ggh4x' package ...
nrow dataFiltered(): 342
using 'ggh4x' package ...
nrow dataFiltered(): 338
using 'ggh4x' package ...
nrow dataFiltered(): 342
using 'ggh4x' package ...
NA
p35781/Proteomics/EXPLORIS_2/analytic_20240726/20240726_C35781_006_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20240729/20240729_003_autoQC03dda.raw
p3000/Proteomics/EXPLORIS_2/lkunz_20240729/20240729_003_autoQC03dda.raw
vals$rawrr: TRUE
Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20240729/20240729_003_autoQC03dda.raw
Plotting chromatograms ...
Read 22032 items
NA
nFacets: 1
nrow dataFiltered(): 325
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 108
using 'ggh4x' package ...
nrow dataFiltered(): 325
using 'ggh4x' package ...
nrow dataFiltered(): 108
using 'ggh4x' package ...
nrow dataFiltered(): 325
using 'ggh4x' package ...
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1360
using 'ggh4x' package ...
Warning: Removed 14 rows containing missing values or values outside the scale
range (`geom_point()`).
nrow dataFiltered(): 325
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 338
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 342
using 'ggh4x' package ...
nrow dataFiltered(): 338
using 'ggh4x' package ...
nrow dataFiltered(): 338
using 'ggh4x' package ...
nrow dataFiltered(): 342
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 325
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 108
using 'ggh4x' package ...
nrow dataFiltered(): 108
using 'ggh4x' package ...
nrow dataFiltered(): 325
using 'ggh4x' package ...
nrow dataFiltered(): 108
using 'ggh4x' package ...


Execution halted