Listening on http://127.0.0.1:34163 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-07 12:22:19.683715 | timeMax: 2024-08-06 12:22:19.684304 | timeDiff: 5184000.00058842 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-07 10:22:19.684 | timeMax: 2024-08-06 10:22:19.684 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). Warning in observe() : timeDiff is higher than timeRange p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_000_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_000_autoQC01.raw NA p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_000_autoQC01.raw plotClick: NA p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_000_autoQC01.raw plotClick: NA plotClick: p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_000_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_000_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/LUMOS_2/pgehrig_20240624_2PCA/20240624_030_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/pgehrig_20240624_2PCA/20240624_030_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/pgehrig_20240624_2PCA/20240624_030_autoQC01.raw Plotting chromatograms ... Read 22032 items p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_000_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_000_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_000_autoQC01.raw Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_000_autoQC01.raw Plotting chromatograms ... Read 22032 items p35882/Proteomics/LUMOS_2/analytic_20240726/20240726_C35882_013_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35882/Proteomics/LUMOS_2/analytic_20240726/20240726_C35882_013_autoQC01.raw Reading raw file: /srv/www/htdocs//p35882/Proteomics/LUMOS_2/analytic_20240726/20240726_C35882_013_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p3127/Proteomics/LUMOS_2/ackle_20240719/20240719_031_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240719/20240719_031_autoQC01.raw Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240719/20240719_031_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases p3127/Proteomics/LUMOS_2/ackle_20240719_NL20/20240725_037_autoQC01.raw NA p35445/Proteomics/LUMOS_2/analytic_20240611/20240611_C35445_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240610/20240610_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240610/20240610_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240610/20240610_001_autoQC01.raw Plotting chromatograms ... Read 22032 items p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_000_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_000_autoQC01.raw Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_000_autoQC01.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-07 14:02:23.243122 | timeMax: 2024-08-06 14:02:23.243685 | timeDiff: 5184000.00056291 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1728 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-07 12:02:23.243 | timeMax: 2024-08-06 12:02:23.244 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). NA p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_000_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_000_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-07 14:22:56.785765 | timeMax: 2024-08-06 14:22:56.786328 | timeDiff: 5184000.00056243 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-07 12:22:56.786 | timeMax: 2024-08-06 12:22:56.786 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-07 14:23:07.011898 | timeMax: 2024-08-06 14:23:07.012463 | timeDiff: 5184000.00056505 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-06-07 12:23:07.012 | timeMax: 2024-08-06 12:23:07.012 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). NA p35993/Proteomics/EXPLORIS_2/analytic_20240806/20240806_C35993_001_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... p35806/Proteomics/EXPLORIS_2/analytic_20240731/20240731_C35806_018_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/lkunz_20240729/20240729_004_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-07 15:03:09.059106 | timeMax: 2024-08-06 15:03:09.059676 | timeDiff: 5184000.0005703 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 832 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-07 13:03:09.05911 | timeMax: 2024-08-06 13:03:09.05968 | timeDiff: 5184000.00056982 nFacets: 4 nrow dataFiltered(): 832 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-07 13:03:09.059 | timeMax: 2024-08-06 13:03:09.06 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 832 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... NA input timeRange: 15552000 | timeMin: 2024-06-07 13:03:09.059 | timeMax: 2024-08-06 15:03:28.816615 | timeDiff: 5184019.75761533 nFacets: 4 nrow dataFiltered(): 832 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-06-07 13:03:09.059 | timeMax: 2024-08-06 13:03:28.817 | timeDiff: 5184019.7579999 nFacets: 4 nrow dataFiltered(): 832 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-02-08 13:03:30.40202 | timeMax: 2024-08-06 13:03:28.817 | timeDiff: 15551998.4149799 nFacets: 4 nrow dataFiltered(): 2444 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-02-08 15:03:33.046768 | timeMax: 2024-08-06 13:03:28.817 | timeDiff: 15548395.7702317 nFacets: 4 nrow dataFiltered(): 2444 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-02-08 14:03:33.047 | timeMax: 2024-08-06 13:03:28.817 | timeDiff: 15548395.77 nrow dataFiltered(): 468 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-07 15:06:19.839778 | timeMax: 2024-08-06 15:06:19.840346 | timeDiff: 5184000.0005672 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1744 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-07 13:06:19.84 | timeMax: 2024-08-06 13:06:19.84 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1744 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). Warning in observe() : timeDiff is higher than timeRange NA p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_000_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_000_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_001_autoQC01.raw plotClick: vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_001_autoQC01.raw NA Plotting chromatograms ... Plotting chromatograms ... Execution halted