Listening on http://127.0.0.1:34311 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-09 13:21:15.841951 | timeMax: 2024-08-08 13:21:15.842534 | timeDiff: 5184000.00058341 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1280 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-09 11:21:15.842 | timeMax: 2024-08-08 11:21:15.843 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). Warning in observe() : timeDiff is higher than timeRange input timeRange: 7776000 | timeMin: 2024-07-10 11:21:17.584 | timeMax: 2024-08-08 11:21:15.843 | timeDiff: 2505598.25899982 nFacets: 4 nrow dataFiltered(): 784 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-11 11:21:28.161 | timeMax: 2024-08-08 11:21:15.843 | timeDiff: 2419187.68199992 nFacets: 4 nrow dataFiltered(): 768 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-13 11:21:28.161 | timeMax: 2024-08-08 11:21:15.843 | timeDiff: 2246387.68199992 nFacets: 4 nrow dataFiltered(): 720 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). NA p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_031_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_031_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_031_autoQC01.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-09 14:59:19.561645 | timeMax: 2024-08-08 14:59:19.562225 | timeDiff: 5184000.00058007 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-09 12:59:19.562 | timeMax: 2024-08-08 12:59:19.562 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1744 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). p3127/Proteomics/LUMOS_2/ackle_20240805_NL19_2/20240805_021_autoQC01.raw input timeRange: 7776000 | timeMin: 2024-07-31 12:59:20.93 | timeMax: 2024-08-08 12:59:19.562 | timeDiff: 691198.631999969 nFacets: 4 nrow dataFiltered(): 144 using 'ggh4x' package ... p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_001_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_001_autoQC01.raw Plotting chromatograms ... Read 22032 items plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-10 09:25:41.02993 | timeMax: 2024-08-09 09:25:41.030492 | timeDiff: 5184000.00056195 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1760 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-10 07:25:41.03 | timeMax: 2024-08-09 07:25:41.03 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1760 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). NA p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_011_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_011_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_011_autoQC01.raw Plotting chromatograms ... Read 22032 items fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-10 09:41:55.370992 | timeMax: 2024-08-09 09:41:55.371563 | timeDiff: 5184000.00057054 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 0 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 522 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-10 07:41:55.37099 | timeMax: 2024-08-09 07:41:55.37156 | timeDiff: 5184000.00057006 nFacets: 0 nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-10 07:41:55.371 | timeMax: 2024-08-09 07:41:55.372 | timeDiff: 5184000.00099993 nFacets: 0 nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... NA p35868/Proteomics/TIMSTOF_1/lkunz_20240806_/zip/20240806_018_autoQC03dia.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-10 17:33:00.690965 | timeMax: 2024-08-09 17:33:00.691533 | timeDiff: 5184000.00056767 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1728 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-10 15:33:00.691 | timeMax: 2024-08-09 15:33:00.692 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). NA p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_011_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_011_autoQC01.raw plotClick: vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_011_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_013_autoQC01.raw p35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_001_autoQC01.raw p35835/Proteomics/LUMOS_2/analytic_20240718/20240718_C35835_004_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-11 09:30:10.362218 | timeMax: 2024-08-10 09:30:10.364162 | timeDiff: 5184000.00194383 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-06-11 07:30:10.362 | timeMax: 2024-08-10 07:30:10.364 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 1744 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_021_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_021_autoQC01.raw NA plotClick: p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_021_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240719_NL20/20240719_001_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_021_autoQC01.raw Plotting chromatograms ... Read 22032 items NA plotClick: p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_021_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-11 11:18:55.484334 | timeMax: 2024-08-10 11:18:55.484899 | timeDiff: 5184000.00056481 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-06-11 09:18:55.484 | timeMax: 2024-08-10 09:18:55.485 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 558 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p35781/Proteomics/TIMSTOF_1/analytic_20240719_muscle/zip/20240719_C35781_001_autoQC03dia.d.zip NA p35868/Proteomics/TIMSTOF_1/lkunz_20240806_/zip/20240806_001b_autoQC03dia.d.zip p35868/Proteomics/TIMSTOF_1/lkunz_20240806_/zip/20240806_018_autoQC03dia.d.zip NA p35868/Proteomics/TIMSTOF_1/lkunz_20240806_/zip/20240807_003_autoQC03dia.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-11 14:16:56.627323 | timeMax: 2024-08-10 14:16:56.627896 | timeDiff: 5184000.00057244 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1744 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-11 12:16:56.627 | timeMax: 2024-08-10 12:16:56.628 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1744 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_031_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_031_autoQC01.raw NA p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_025_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_025_autoQC01.raw NA p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_025_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_025_autoQC01.raw NA p35606/Proteomics/LUMOS_2/analytic_20240704/20240704_C35606_008_autoQC01.raw NA p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_031_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_031_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_031_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_031_autoQC01.raw plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-11 14:31:04.755437 | timeMax: 2024-08-10 14:31:04.756029 | timeDiff: 5184000.00059199 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 306 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-11 12:31:04.75544 | timeMax: 2024-08-10 12:31:04.75603 | timeDiff: 5184000.00059009 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-11 12:31:04.755 | timeMax: 2024-08-10 12:31:04.756 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... p35615/Proteomics/EXPLORIS_2/analytic_20240808/20240808_C35615_008_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-12 11:06:02.816473 | timeMax: 2024-08-11 11:06:02.817041 | timeDiff: 5184000.00056767 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-06-12 09:06:02.816 | timeMax: 2024-08-11 09:06:02.817 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1712 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-12 11:06:22.579534 | timeMax: 2024-08-11 11:06:22.580106 | timeDiff: 5184000.00057173 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-06-12 09:06:22.58 | timeMax: 2024-08-11 09:06:22.58 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1712 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_040_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_040_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_040_autoQC01.raw Plotting chromatograms ... Read 22032 items fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-13 09:29:01.466749 | timeMax: 2024-08-12 09:29:01.467996 | timeDiff: 5184000.00124669 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-13 07:29:01.46675 | timeMax: 2024-08-12 07:29:01.468 | timeDiff: 5184000.00125003 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-13 07:29:01.467 | timeMax: 2024-08-12 07:29:01.468 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... p35615/Proteomics/EXPLORIS_2/analytic_20240808/20240808_C35615_008_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-13 09:29:10.586431 | timeMax: 2024-08-12 09:29:10.58725 | timeDiff: 5184000.00081944 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-06-13 07:29:10.586 | timeMax: 2024-08-12 07:29:10.587 | timeDiff: 5184000.00099993 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE NA nrow dataFiltered(): 1216 using 'ggh4x' package ... NA p35615/Proteomics/EXPLORIS_2/analytic_20240808/20240808_C35615_008_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//p35615/Proteomics/EXPLORIS_2/analytic_20240808/20240808_C35615_008_autoQC03dda.raw p35615/Proteomics/EXPLORIS_2/analytic_20240808/20240808_C35615_008_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-13 10:05:48.373832 | timeMax: 2024-08-12 10:05:48.374398 | timeDiff: 5184000.00056553 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 429 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-13 08:05:48.37383 | timeMax: 2024-08-12 08:05:48.3744 | timeDiff: 5184000.00056982 nFacets: 1 nrow dataFiltered(): 429 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-13 08:05:48.374 | timeMax: 2024-08-12 08:05:48.374 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 429 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-03 08:05:50.34 | timeMax: 2024-08-12 08:05:48.374 | timeDiff: 777598.034000158 nFacets: 1 nrow dataFiltered(): 91 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2024-08-06 08:05:56.181 | timeMax: 2024-08-12 08:05:48.374 | timeDiff: 518392.193000078 nFacets: 1 nrow dataFiltered(): 91 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p35920/Proteomics/EXPLORIS_2/analytic_20240809/20240809_C35920_008_autoQC03dda_newCol.raw p35920/Proteomics/EXPLORIS_2/analytic_20240809/20240809_C35920_007_autoQC03dda.raw p35920/Proteomics/EXPLORIS_2/analytic_20240809/20240809_C35920_010_autoQC03dda_newCol.raw p35920/Proteomics/EXPLORIS_2/analytic_20240809/20240809_C35920_006_autoQC03dda.raw p35920/Proteomics/EXPLORIS_2/analytic_20240809/20240809_C35920_003_autoQC03dda.raw input timeRange: 7776000 | timeMin: 2024-07-26 08:06:00.188 | timeMax: 2024-08-12 08:05:48.374 | timeDiff: 1468788.18600011 nFacets: 1 nrow dataFiltered(): 143 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-26 08:06:28.167 | timeMax: 2024-08-12 08:05:48.374 | timeDiff: 4060760.20700002 nFacets: 1 nrow dataFiltered(): 377 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_2/analytic_20240722/20240722_005_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/analytic_20240722/20240722_003_autoQC03dda.raw p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_028_autoQC03dda.raw nrow dataFiltered(): 377 using 'ggh4x' package ... nrow dataFiltered(): 198 using 'ggh4x' package ... NA p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_028_autoQC03dda.raw p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_001_autoQC03dda_rep.raw plotClick: fn has changed to /srv/www/htdocs//p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_001_autoQC03dda_rep.raw NA p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_001_autoQC03dda.raw p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_028_autoQC03dda.raw NA p35532/Proteomics/EXPLORIS_2/analytic_20240702/20240702_C35532_028_autoQC03dda.raw p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_001_autoQC03dda_rep.raw p35532/Proteomics/EXPLORIS_2/analytic_20240702/20240702_C35532_028_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-13 10:08:48.71507 | timeMax: 2024-08-12 10:08:48.715707 | timeDiff: 5184000.00063658 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-13 08:08:48.715 | timeMax: 2024-08-12 08:08:48.716 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 429 using 'ggh4x' package ... p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_028_autoQC03dda.raw nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 429 using 'ggh4x' package ... p35532/Proteomics/EXPLORIS_2/analytic_20240702/20240702_C35532_028_autoQC03dda.raw p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_001_autoQC03dda_rep.raw NA p35532/Proteomics/EXPLORIS_2/analytic_20240708/20240708_C35532_001a_autoQC03dda.raw NA p35532/Proteomics/EXPLORIS_2/analytic_20240702/20240702_C35532_028_autoQC03dda.raw p35920/Proteomics/EXPLORIS_2/analytic_20240809/20240809_C35920_007_autoQC03dda.raw p35920/Proteomics/EXPLORIS_2/analytic_20240809/20240809_C35920_010_autoQC03dda_newCol.raw input timeRange: 15552000 | timeMin: 2024-06-13 08:08:48.715 | timeMax: 2024-08-12 10:13:19.373195 | timeDiff: 5184270.65819526 nFacets: 1 nrow dataFiltered(): 429 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-06-13 08:08:48.715 | timeMax: 2024-08-12 08:13:19.373 | timeDiff: 5184270.65799999 nFacets: 1 nrow dataFiltered(): 429 using 'ggh4x' package ... nrow dataFiltered(): 288 using 'ggh4x' package ... nFacets: 1 input timeRange: 15552000 | timeMin: 2024-04-04 08:13:20.804 | timeMax: 2024-08-12 08:13:19.373 | timeDiff: 11231998.569 nFacets: 1 nrow dataFiltered(): 689 using 'ggh4x' package ... nrow dataFiltered(): 774 using 'ggh4x' package ... nFacets: 1 NA input timeRange: 31536000 | timeMin: 2024-04-04 08:13:20.804 | timeMax: 2024-08-12 10:14:38.994218 | timeDiff: 11232078.190218 nFacets: 1 nrow dataFiltered(): 689 using 'ggh4x' package ... nrow dataFiltered(): 774 using 'ggh4x' package ... nFacets: 1 input timeRange: 31536000 | timeMin: 2024-04-04 08:13:20.804 | timeMax: 2024-08-12 08:14:38.994 | timeDiff: 11232078.1900001 nFacets: 1 nrow dataFiltered(): 689 using 'ggh4x' package ... nrow dataFiltered(): 774 using 'ggh4x' package ... nFacets: 1 input timeRange: 31536000 | timeMin: 2024-03-10 08:14:40.476 | timeMax: 2024-08-12 08:14:38.994 | timeDiff: 13391998.5179999 nFacets: 1 nrow dataFiltered(): 858 using 'ggh4x' package ... nrow dataFiltered(): 1080 using 'ggh4x' package ... nFacets: 1 p3000/Proteomics/EXPLORIS_2/spfammatter_20240402/20240402_003_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_2/spfammatter_20240402/20240402_003_autoQC03dda.raw NA input timeRange: 31536000 | timeMin: 2024-07-04 08:14:46.851 | timeMax: 2024-08-12 08:14:38.994 | timeDiff: 3369592.14299989 nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nrow dataFiltered(): 198 using 'ggh4x' package ... nFacets: 1 p35532/Proteomics/EXPLORIS_2/analytic_20240702/20240702_C35532_028_autoQC03dda.raw p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_001_autoQC03dda_rep.raw NA nrow dataFiltered(): 286 using 'ggh4x' package ... p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_001_autoQC03dda.raw NA p35532/Proteomics/EXPLORIS_2/analytic_20240702/20240702_C35532_028_autoQC03dda.raw NA p35920/Proteomics/EXPLORIS_2/analytic_20240809/20240809_C35920_007_autoQC03dda.raw NA p35920/Proteomics/EXPLORIS_2/analytic_20240809/20240809_C35920_007_autoQC03dda.raw p35920/Proteomics/EXPLORIS_2/analytic_20240809/20240809_C35920_010_autoQC03dda_newCol.raw p35532/Proteomics/EXPLORIS_2/analytic_20240702/20240702_C35532_028_autoQC03dda.raw NA p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_028_autoQC03dda.raw NA p35532/Proteomics/EXPLORIS_2/analytic_20240704_Aurora/20240704_C35532_001_autoQC03dda.raw NA p35532/Proteomics/EXPLORIS_2/analytic_20240702/20240702_C35532_028_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-13 11:53:22.063258 | timeMax: 2024-08-12 11:53:22.063829 | timeDiff: 5184000.00057125 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 429 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-13 09:53:22.06326 | timeMax: 2024-08-12 09:53:22.06383 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 429 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-13 09:53:22.063 | timeMax: 2024-08-12 09:53:22.064 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 429 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 429 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-13 11:53:32.361546 | timeMax: 2024-08-12 11:53:32.362125 | timeDiff: 5184000.00057936 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp NA nFacets: 4 input timeRange: 7776000 | timeMin: 2024-06-13 09:53:32.362 | timeMax: 2024-08-12 09:53:32.362 | timeDiff: 5184000 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-05 09:53:23.456 | timeMax: 2024-08-12 09:53:22.064 | timeDiff: 604798.607999802 nFacets: 1 nrow dataFiltered(): 91 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 91 using 'ggh4x' package ... p35920/Proteomics/EXPLORIS_2/analytic_20240809/20240809_C35920_007_autoQC03dda.raw p35920/Proteomics/EXPLORIS_2/analytic_20240809/20240809_C35920_010_autoQC03dda_newCol.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-13 12:49:06.532633 | timeMax: 2024-08-12 12:49:06.533213 | timeDiff: 5184000.00058031 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-13 10:49:06.533 | timeMax: 2024-08-12 10:49:06.533 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-13 14:02:21.504388 | timeMax: 2024-08-12 14:02:21.504955 | timeDiff: 5184000.0005672 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 442 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-13 12:02:21.50439 | timeMax: 2024-08-12 12:02:21.50496 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-13 12:02:21.504 | timeMax: 2024-08-12 12:02:21.505 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... p35920/Proteomics/EXPLORIS_2/analytic_20240809/20240812_C35920_001_autoQC03dda_Aurora_20SPD.raw nrow dataFiltered(): 442 using 'ggh4x' package ... nrow dataFiltered(): 288 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-13 15:30:09.523 | timeMax: 2024-08-12 15:30:09.523581 | timeDiff: 5184000.00058055 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 input timeRange: 7776000 | timeMin: 2024-06-13 13:30:09.523 | timeMax: 2024-08-12 13:30:09.524 | timeDiff: 5184000.00099993 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 442 using 'ggh4x' package ... p35920/Proteomics/EXPLORIS_2/analytic_20240809/20240812_C35920_001_autoQC03dda_Aurora_20SPD.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-13 16:37:48.224005 | timeMax: 2024-08-12 16:37:48.22457 | timeDiff: 5184000.00056577 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-13 14:37:48.224 | timeMax: 2024-08-12 14:37:48.225 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1664 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). Warning in observe() : timeDiff is higher than timeRange p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_013_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw p35650/Proteomics/LUMOS_2/analytic_20240705/20240705_C35650_001_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_019_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_001_autoQC01_20240702133426.raw p3127/Proteomics/LUMOS_2/ackle_20240701_20240702_NL18/20240701_013_autoQC01.raw NA p35804/Proteomics/LUMOS_2/analytic_20240718/20240719_C35804_001_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240719/20240719_001_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240719/20240719_019_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240719/20240719_025_autoQC01.raw NA p3127/Proteomics/LUMOS_2/ackle_20240719/20240719_031_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240719/20240719_031_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240719/20240719_031_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases NA p36016/Proteomics/LUMOS_2/analytic_20240812/20240812_C36016_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p36016/Proteomics/LUMOS_2/analytic_20240812/20240812_C36016_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p36016/Proteomics/LUMOS_2/analytic_20240812/20240812_C36016_001_autoQC01.raw Plotting chromatograms ... Read 22032 items nFacets: 4 nrow dataFiltered(): 768 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240725_02_autoQC01.raw NA input timeRange: 7776000 | timeMin: 2024-06-13 14:37:48.224 | timeMax: 2024-08-12 16:39:06.8028 | timeDiff: 5184078.57880044 nFacets: 4 nrow dataFiltered(): 768 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-13 14:37:48.224 | timeMax: 2024-08-12 14:39:06.803 | timeDiff: 5184078.579 nFacets: 4 nrow dataFiltered(): 768 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 768 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-06-13 14:37:48.224 | timeMax: 2024-08-12 16:39:16.728042 | timeDiff: 5184088.50404239 nFacets: 4 nrow dataFiltered(): 768 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-06-13 14:37:48.224 | timeMax: 2024-08-12 14:39:16.728 | timeDiff: 5184088.50399995 nFacets: 4 nrow dataFiltered(): 768 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 768 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-04-24 14:39:18.008 | timeMax: 2024-08-12 14:39:16.728 | timeDiff: 9503998.72000003 nFacets: 4 nrow dataFiltered(): 1776 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_021_autoQC01.raw Reading raw file: /srv/www/htdocs//p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_021_autoQC01.raw Plotting chromatograms ... Read 22032 items p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_021_autoQC01.raw p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_006_autoQC01.raw p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_011_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_014_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_014_autoQC01.raw p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_001_autoQC01.raw p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_026_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240611_29_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240617_01_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240617_02_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240705_05_autoQC01.raw nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-14 09:02:56.286682 | timeMax: 2024-08-13 09:02:56.287256 | timeDiff: 5184000.00057411 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-14 07:02:56.287 | timeMax: 2024-08-13 07:02:56.287 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-14 09:24:14.396962 | timeMax: 2024-08-13 09:24:14.397541 | timeDiff: 5184000.0005784 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-06-14 07:24:14.397 | timeMax: 2024-08-13 07:24:14.398 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-14 09:25:41.010501 | timeMax: 2024-08-13 09:25:41.011073 | timeDiff: 5184000.00057244 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 442 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-14 07:25:41.0105 | timeMax: 2024-08-13 07:25:41.01107 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-14 07:25:41.011 | timeMax: 2024-08-13 07:25:41.011 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... NA p35920/Proteomics/EXPLORIS_2/analytic_20240809/20240812_C35920_003_autoQC03dda_Aurora_20SPD_2ul.raw nFacets: 1 nrow dataFiltered(): 247 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... p35615/Proteomics/EXPLORIS_1/analytic_20240812/20240812_C35615_005_autoQC03dda.raw p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240806/20240806_067_autoQC03dda.raw p35615/Proteomics/EXPLORIS_1/analytic_20240812/20240812_C35615_005_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-14 09:39:23.122966 | timeMax: 2024-08-13 09:39:23.123544 | timeDiff: 5184000.00057888 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-06-14 07:39:23.123 | timeMax: 2024-08-13 07:39:23.124 | timeDiff: 5184000.00100017 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 960 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). NA p35707/Proteomics/FUSION_2/cmirov_20240704/20240704_001_autoQC01.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 832 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-14 10:01:49.291947 | timeMax: 2024-08-13 10:01:49.29251 | timeDiff: 5184000.00056314 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 960 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-06-14 08:01:49.292 | timeMax: 2024-08-13 08:01:49.293 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 960 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-15 08:53:26.052653 | timeMax: 2024-08-14 08:53:26.053223 | timeDiff: 5184000.00057006 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-15 06:53:26.053 | timeMax: 2024-08-14 06:53:26.053 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 247 using 'ggh4x' package ... nrow dataFiltered(): 247 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-15 09:38:35.498242 | timeMax: 2024-08-14 09:38:35.498814 | timeDiff: 5184000.00057149 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 442 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-15 07:38:35.49824 | timeMax: 2024-08-14 07:38:35.49881 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-15 07:38:35.498 | timeMax: 2024-08-14 07:38:35.499 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... NA NA p35868/Proteomics/TIMSTOF_1/lkunz_20240806_/zip/20240806_018_autoQC03dia_1.d.zip p35987/Proteomics/TIMSTOF_1/analytic_20240808_/zip/20240808_007_autoQC03dda.d.zip input timeRange: 7776000 | timeMin: 2024-05-16 07:38:37.10979 | timeMax: 2024-08-14 07:38:35.499 | timeDiff: 7775998.38920999 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 774 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-16 10:39:02.484314 | timeMax: 2024-08-14 07:38:35.499 | timeDiff: 7772373.01468635 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 774 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-16 08:39:02.484 | timeMax: 2024-08-14 07:38:35.499 | timeDiff: 7772373.0150001 input timeRange: 15552000 | timeMin: 2024-05-16 08:39:02.484 | timeMax: 2024-08-14 09:39:13.838743 | timeDiff: 7772411.35474348 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 774 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-16 08:39:02.484 | timeMax: 2024-08-14 07:39:13.839 | timeDiff: 7772411.35500002 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 774 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-02-16 07:39:15.00257 | timeMax: 2024-08-14 07:39:13.839 | timeDiff: 15551998.8364298 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 1584 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-02-16 09:39:17.981112 | timeMax: 2024-08-14 07:39:13.839 | timeDiff: 15548395.8578875 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 1584 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-02-16 08:39:17.981 | timeMax: 2024-08-14 07:39:13.839 | timeDiff: 15548395.858 nFacets: 1 nrow dataFiltered(): 871 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... p35615/Proteomics/EXPLORIS_1/analytic_20240812/20240812_C35615_009_autoQC03dda.raw NA p35615/Proteomics/EXPLORIS_1/analytic_20240812/20240812_C35615_005_autoQC03dda.raw nrow dataFiltered(): 871 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-16 10:19:36.559441 | timeMax: 2024-08-15 10:19:36.560008 | timeDiff: 5184000.00056696 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 442 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-16 08:19:36.55944 | timeMax: 2024-08-15 08:19:36.56001 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-16 08:19:36.559 | timeMax: 2024-08-15 08:19:36.56 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 442 using 'ggh4x' package ... nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... NA p35615/Proteomics/EXPLORIS_1/analytic_20240812/20240812_C35615_009_autoQC03dda.raw p35615/Proteomics/EXPLORIS_1/analytic_20240812/20240812_C35615_005_autoQC03dda.raw NA p35920/Proteomics/EXPLORIS_1/analytic_20240805/20240805_C35920_008_autoQC03dia.raw p35615/Proteomics/EXPLORIS_1/analytic_20240812/20240812_C35615_009_autoQC03dda.raw p35615/Proteomics/EXPLORIS_1/analytic_20240812/20240812_C35615_005_autoQC03dda.raw p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240806/20240806_067_autoQC03dda.raw NA p35920/Proteomics/EXPLORIS_1/analytic_20240805/20240805_C35920_007_autoQC03dda.raw NA nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 442 using 'ggh4x' package ... nrow dataFiltered(): 442 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/lkunz_20240729/20240729_003_autoQC03dda.raw p35930/Proteomics/EXPLORIS_2/analytic_20240729/20240729_C35930_005_autoQC03dda.raw p35806/Proteomics/EXPLORIS_2/analytic_20240731/20240731_C35806_018_autoQC03dda.raw Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-16 17:01:59.550769 | timeMax: 2024-08-15 17:01:59.551993 | timeDiff: 5184000.00122428 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 442 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-16 15:01:59.55077 | timeMax: 2024-08-15 15:01:59.55199 | timeDiff: 5184000.00121999 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-16 15:01:59.551 | timeMax: 2024-08-15 15:01:59.552 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_022_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_000_autoQC01.raw NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_001_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_022_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01_rr.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01_rr.raw NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01_rr.raw vals$rawrr: TRUE NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01_rr.raw plotClick: fn has changed to /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01_rr.raw NA Reading raw file: /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01_rr.raw Plotting chromatograms ... Read 22032 items nFacets: 2 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... p36016/Proteomics/LUMOS_2/analytic_20240812/20240812_C36016_007_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-20 09:02:57.927126 | timeMax: 2024-08-19 09:02:57.927705 | timeDiff: 5184000.00057888 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 442 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-20 07:02:57.92713 | timeMax: 2024-08-19 07:02:57.9277 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-20 07:02:57.927 | timeMax: 2024-08-19 07:02:57.928 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA_rr/20240813_031_autoQC03dda.raw Execution halted Warning message: agg could not write to the given file