Listening on http://127.0.0.1:42297 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-20 14:02:52.205616 | timeMax: 2024-08-19 14:02:52.206234 | timeDiff: 5184000.0006175 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-20 12:02:52.20562 | timeMax: 2024-08-19 12:02:52.20623 | timeDiff: 5184000.00060987 nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-20 12:02:52.206 | timeMax: 2024-08-19 12:02:52.206 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... NA p3000/Proteomics/FUSION_2/chiawei_20240812/20240812_003_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-20 14:14:08.224639 | timeMax: 2024-08-19 14:14:08.225219 | timeDiff: 5184000.00058031 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-20 12:14:08.225 | timeMax: 2024-08-19 12:14:08.225 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... input timeRange: 94608000 | timeMin: 2024-06-20 12:14:08.225 | timeMax: 2024-08-19 14:14:40.829995 | timeDiff: 5184032.60499525 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... input timeRange: 94608000 | timeMin: 2024-06-20 12:14:08.225 | timeMax: 2024-08-19 12:14:40.83 | timeDiff: 5184032.60500002 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... input timeRange: 94608000 | timeMin: 2022-01-22 12:14:42.057 | timeMax: 2024-08-19 12:14:40.83 | timeDiff: 81215998.773 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 2664 using 'ggh4x' package ... NA input timeRange: 94608000 | timeMin: 2022-05-07 12:14:45.239 | timeMax: 2024-08-19 12:14:40.83 | timeDiff: 72143995.5909998 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 2664 using 'ggh4x' package ... input timeRange: 94608000 | timeMin: 2022-09-26 12:22:02.977 | timeMax: 2024-08-19 12:14:40.83 | timeDiff: 59874757.8529999 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 2664 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-20 14:24:46.518909 | timeMax: 2024-08-19 14:24:46.51951 | timeDiff: 5184000.00060034 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-20 12:24:46.519 | timeMax: 2024-08-19 12:24:46.52 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 0 input timeRange: 31536000 | timeMin: 2024-06-20 12:24:46.519 | timeMax: 2024-08-19 14:25:02.173869 | timeDiff: 5184015.65486932 nFacets: 4 nrow dataFiltered(): 0 input timeRange: 31536000 | timeMin: 2024-06-20 12:24:46.519 | timeMax: 2024-08-19 12:25:02.174 | timeDiff: 5184015.65499997 nFacets: 4 nrow dataFiltered(): 0 input timeRange: 31536000 | timeMin: 2023-09-01 12:25:03.233 | timeMax: 2024-08-19 12:25:02.174 | timeDiff: 30499198.941 nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 2664 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-20 17:03:29.86816 | timeMax: 2024-08-19 17:03:29.869581 | timeDiff: 5184000.00142074 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 442 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-20 15:03:29.86816 | timeMax: 2024-08-19 15:03:29.86958 | timeDiff: 5184000.00142002 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-20 15:03:29.868 | timeMax: 2024-08-19 15:03:29.87 | timeDiff: 5184000.00199986 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_1/lkunz_20240819/20240819_003_autoQC03dia.raw NA nrow dataFiltered(): 144 using 'ggh4x' package ... NA input timeRange: 7776000 | timeMin: 2024-05-21 15:03:32.38746 | timeMax: 2024-08-19 15:03:29.87 | timeDiff: 7775997.48253989 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-21 18:04:10.44832 | timeMax: 2024-08-19 15:03:29.87 | timeDiff: 7772359.42167974 nrow dataFiltered(): 216 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-21 16:04:10.448 | timeMax: 2024-08-19 15:03:29.87 | timeDiff: 7772359.42199993 nrow dataFiltered(): 442 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-20 17:18:18.590215 | timeMax: 2024-08-19 17:18:18.592072 | timeDiff: 5184000.00185633 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-06-20 15:18:18.59 | timeMax: 2024-08-19 15:18:18.592 | timeDiff: 5184000.00200009 nFacets: 4 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-20 17:18:29.897842 | timeMax: 2024-08-19 17:18:29.899506 | timeDiff: 5184000.00166392 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-06-20 15:18:29.898 | timeMax: 2024-08-19 15:18:29.9 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 960 using 'ggh4x' package ... Warning: Removed 11 rows containing missing values or values outside the scale range (`geom_point()`). NA plotClick: fn has changed to /srv/www/htdocs//p35944/Proteomics/FUSION_2/josephinekempis_20240814/20240815_006_autoQC01.raw p35944/Proteomics/FUSION_2/josephinekempis_20240814/20240815_006_autoQC01.raw p35944/Proteomics/FUSION_2/josephinekempis_20240814/20240815_006_autoQC01.raw plotClick: NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA p3000/Proteomics/FUSION_2/chiawei_20240812/20240812_003_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20240812/20240812_003_autoQC03dia.raw p35944/Proteomics/FUSION_2/josephinekempis_20240814/20240814_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35944/Proteomics/FUSION_2/josephinekempis_20240814/20240814_007_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-20 17:24:36.013799 | timeMax: 2024-08-19 17:24:36.015644 | timeDiff: 5184000.00184441 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) input timeRange: 7776000 | timeMin: 2024-06-20 15:24:36.0138 | timeMax: 2024-08-19 15:24:36.01564 | timeDiff: 5184000.00183964 nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-06-20 15:24:36.014 | timeMax: 2024-08-19 15:24:36.016 | timeDiff: 5184000.00200009 nFacets: 4 nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... p35944/Proteomics/FUSION_2/josephinekempis_20240814/20240814_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35944/Proteomics/FUSION_2/josephinekempis_20240814/20240814_007_autoQC03dda.raw NA p3000/Proteomics/FUSION_2/chiawei_20240812/20240812_003_autoQC03dia.raw NA p35944/Proteomics/FUSION_2/josephinekempis_20240814/20240814_007_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-20 17:40:58.077954 | timeMax: 2024-08-19 17:40:58.079648 | timeDiff: 5184000.00169444 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 input timeRange: 7776000 | timeMin: 2024-06-20 15:40:58.07795 | timeMax: 2024-08-19 15:40:58.07965 | timeDiff: 5184000.00169992 nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-06-20 15:40:58.078 | timeMax: 2024-08-19 15:40:58.08 | timeDiff: 5184000.00199986 nFacets: 4 nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 976 using 'ggh4x' package ... Warning: Removed 11 rows containing missing values or values outside the scale range (`geom_point()`). NA Execution halted Warning messages: 1: agg could not write to the given file 2: agg could not write to the given file