Listening on http://127.0.0.1:45391 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-26 10:48:17.518607 | timeMax: 2024-08-25 10:48:17.519192 | timeDiff: 5184000.00058508 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 0 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 630 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-26 08:48:17.51861 | timeMax: 2024-08-25 08:48:17.51919 | timeDiff: 5184000.00057983 nFacets: 0 nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-26 08:48:17.519 | timeMax: 2024-08-25 08:48:17.519 | timeDiff: 5184000 nFacets: 0 nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... NA p36124/Proteomics/TIMSTOF_1/muegeli_20240823_allsamples_v2/zip/20240823_024_autoQC03dia.d.zip NA p35868/Proteomics/TIMSTOF_1/lkunz_20240806_/zip/20240807_003_autoQC03dia.d.zip p35868/Proteomics/TIMSTOF_1/lkunz_20240806_/zip/20240806_018_autoQC03dia.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 09:02:03.680228 | timeMax: 2024-08-26 09:02:03.680794 | timeDiff: 5184000.00056577 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 07:02:03.68023 | timeMax: 2024-08-26 07:02:03.68079 | timeDiff: 5184000.00056005 nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 07:02:03.68 | timeMax: 2024-08-26 07:02:03.681 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_2/lkunz_20240820/20240820_003_autoQC03dia.raw nrow dataFiltered(): 216 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 09:57:10.53976 | timeMax: 2024-08-26 09:57:10.540986 | timeDiff: 5184000.00122595 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 07:57:10.53976 | timeMax: 2024-08-26 07:57:10.54099 | timeDiff: 5184000.00122976 nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 07:57:10.54 | timeMax: 2024-08-26 07:57:10.541 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 11:06:44.337584 | timeMax: 2024-08-26 11:06:44.338157 | timeDiff: 5184000.00057268 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 12:01:37.461761 | timeMax: 2024-08-26 12:01:37.462802 | timeDiff: 5184000.00104117 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 10:01:37.46176 | timeMax: 2024-08-26 10:01:37.4628 | timeDiff: 5184000.00103998 nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 10:01:37.462 | timeMax: 2024-08-26 10:01:37.463 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... p36073/Proteomics/EXPLORIS_2/analytic_20240823/20240823_C36073_024_autoQC03dda.raw p36060/Proteomics/EXPLORIS_2/analytic_20240821/20240821_C36060_046_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 14:31:10.434397 | timeMax: 2024-08-26 14:31:10.434959 | timeDiff: 5184000.00056219 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 12:31:10.4344 | timeMax: 2024-08-26 12:31:10.43496 | timeDiff: 5184000.00056005 nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 12:31:10.434 | timeMax: 2024-08-26 12:31:10.435 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... NA p36073/Proteomics/EXPLORIS_2/analytic_20240823/20240823_C36073_024_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 14:31:26.557727 | timeMax: 2024-08-26 14:31:26.558286 | timeDiff: 5184000.00055909 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1184 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 12:31:26.558 | timeMax: 2024-08-26 12:31:26.558 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1184 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... NA Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 277398 autoQC01 module APEX long nrow: 888 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 14:44:49.646608 | timeMax: 2024-08-26 14:44:49.648032 | timeDiff: 5184000.0014236 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 12:44:49.64661 | timeMax: 2024-08-26 12:44:49.64803 | timeDiff: 5184000.00142002 nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 12:44:49.647 | timeMax: 2024-08-26 12:44:49.648 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 14:45:45.150146 | timeMax: 2024-08-26 14:45:45.151469 | timeDiff: 5184000.0013237 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-06-27 12:45:45.15 | timeMax: 2024-08-26 12:45:45.151 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 14:54:36.036891 | timeMax: 2024-08-26 14:54:36.037739 | timeDiff: 5184000.00084805 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 12:54:36.03689 | timeMax: 2024-08-26 12:54:36.03774 | timeDiff: 5184000.0008502 nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 12:54:36.037 | timeMax: 2024-08-26 12:54:36.038 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... NA p36073/Proteomics/EXPLORIS_2/analytic_20240823/20240823_C36073_024_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 14:55:11.35709 | timeMax: 2024-08-26 14:55:11.358056 | timeDiff: 5184000.00096583 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 12:55:11.35709 | timeMax: 2024-08-26 12:55:11.35806 | timeDiff: 5184000.00097013 nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 12:55:11.357 | timeMax: 2024-08-26 12:55:11.358 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1184 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_2/lkunz_20240826/20240826_001_autoQC01.raw p3000/Proteomics/EXPLORIS_2/lkunz_20240826/20240826_001_autoQC01.raw NA p3000/Proteomics/EXPLORIS_2/lkunz_20240820/20240820_003_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 15:00:22.191839 | timeMax: 2024-08-26 15:00:22.19317 | timeDiff: 5184000.00133109 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-06-27 13:00:22.192 | timeMax: 2024-08-26 13:00:22.193 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1184 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 481 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/lkunz_20240826/20240826_002_autoQC03dda.raw nrow dataFiltered(): 481 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 15:04:02.950078 | timeMax: 2024-08-26 15:04:02.951611 | timeDiff: 5184000.00153303 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-06-27 13:04:02.95 | timeMax: 2024-08-26 13:04:02.952 | timeDiff: 5184000.00199986 nFacets: 4 nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-28 07:54:04.808158 | timeMax: 2024-08-27 07:54:04.80873 | timeDiff: 5184000.00057197 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1152 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-28 05:54:04.808 | timeMax: 2024-08-27 05:54:04.809 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1152 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... p36072/Proteomics/EXPLORIS_1/analytic_20240822/20240822_C36072_017_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p36072/Proteomics/EXPLORIS_1/analytic_20240822/20240822_C36072_017_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/lkunz_20240826/20240826_002_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20240826/20240826_002_autoQC03dda.raw plotClick: input timeRange: 7776000 | timeMin: 2024-08-07 05:54:08.503 | timeMax: 2024-08-27 05:54:04.809 | timeDiff: 1727996.30599999 nFacets: 1 nrow dataFiltered(): 117 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-12 05:54:08.503 | timeMax: 2024-08-27 05:54:04.809 | timeDiff: 1295996.30599999 nFacets: 1 nrow dataFiltered(): 104 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-20 05:55:14.922 | timeMax: 2024-08-27 05:54:04.809 | timeDiff: 604729.887000084 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2024-08-24 05:55:35.825 | timeMax: 2024-08-27 05:54:04.809 | timeDiff: 259108.983999968 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2024-08-12 05:55:40.198 | timeMax: 2024-08-27 05:54:04.809 | timeDiff: 1295904.61100006 nFacets: 1 nrow dataFiltered(): 104 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-12 05:55:40.198 | timeMax: 2024-08-24 05:56:00.727 | timeDiff: 1036820.52900004 nFacets: 1 nrow dataFiltered(): 78 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-28 09:13:06.926289 | timeMax: 2024-08-27 09:13:06.926986 | timeDiff: 5184000.00069618 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-28 07:13:06.92629 | timeMax: 2024-08-27 07:13:06.92699 | timeDiff: 5184000.0007 nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-28 07:13:06.926 | timeMax: 2024-08-27 07:13:06.927 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... NA nrow dataFiltered(): 234 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/lkunz_20240826/20240826_002_autoQC03dda.raw NA p36080/Proteomics/EXPLORIS_1/analytic_20240823/20240823_C36080_016_autoQC03dda.raw p36072/Proteomics/EXPLORIS_1/analytic_20240822/20240822_C36072_017_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-28 09:13:36.577648 | timeMax: 2024-08-27 09:13:36.578221 | timeDiff: 5184000.00057316 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1152 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-28 07:13:36.578 | timeMax: 2024-08-27 07:13:36.578 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1152 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 944 using 'ggh4x' package ... Warning: Removed 39 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 6 rows containing missing values or values outside the scale range (`geom_line()`). p36150/Proteomics/QEXACTIVE_1/analytic_20240826/20240826_C36150_004_autoQC01.raw p36150/Proteomics/QEXACTIVE_1/analytic_20240826/20240826_C36150_004_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 351 using 'ggh4x' package ... p36150/Proteomics/QEXACTIVE_1/analytic_20240826/20240826_C36150_005_autoQC03dda.raw nrow dataFiltered(): 351 using 'ggh4x' package ... p36150/Proteomics/QEXACTIVE_1/analytic_20240826/20240826_C36150_005_autoQC03dda.raw nrow dataFiltered(): 351 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-28 09:57:07.624652 | timeMax: 2024-08-27 09:57:07.625236 | timeDiff: 5184000.00058365 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 944 using 'ggh4x' package ... Warning: Removed 39 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 6 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-06-28 07:57:07.625 | timeMax: 2024-08-27 07:57:07.625 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 944 using 'ggh4x' package ... Warning: Removed 39 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 6 rows containing missing values or values outside the scale range (`geom_line()`). nrow dataFiltered(): 944 using 'ggh4x' package ... Warning: Removed 78 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 6 rows containing missing values or values outside the scale range (`geom_line()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-29 08:11:34.099499 | timeMax: 2024-08-28 08:11:34.100067 | timeDiff: 5184000.00056744 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) input timeRange: 7776000 | timeMin: 2024-06-29 06:11:34.1 | timeMax: 2024-08-28 06:11:34.1 | timeDiff: 5184000 autoQC01 module APEX wide nrow: 277552 autoQC01 module APEX long nrow: 840 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 455 using 'ggh4x' package ... p36060/Proteomics/EXPLORIS_2/analytic_20240821/20240821_C36060_046_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_2/lkunz_20240826/20240826_002_autoQC03dda.raw input timeRange: 7776000 | timeMin: 2024-08-15 06:11:38.759 | timeMax: 2024-08-28 06:11:34.1 | timeDiff: 1123195.34099984 nFacets: 1 nrow dataFiltered(): 78 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... NA p36060/Proteomics/EXPLORIS_2/analytic_20240821/20240821_C36060_046_autoQC03dda.raw NA p36073/Proteomics/EXPLORIS_2/analytic_20240823/20240823_C36073_024_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/lkunz_20240826/20240826_002_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20240826/20240826_002_autoQC03dda.raw nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp NA p36030/Proteomics/TIMSTOF_1/thomasroisin_20240820_QC/zip/20240820_001_autoQC03dia.d.zip p36030/Proteomics/TIMSTOF_1/thomasroisin_20240820_QC/zip/20240820_009_autoQC03dia.d.zip p36124/Proteomics/TIMSTOF_1/muegeli_20240821_allsamples/zip/20240821_001_autoQC03dia.d.zip NA p36024/Proteomics/TIMSTOF_1/thomasroisin_20240822_/zip/20240822_001_autoQC03dia.d.zip p36024/Proteomics/TIMSTOF_1/thomasroisin_20240822_/zip/20240822_012_autoQC03dia.d.zip p36124/Proteomics/TIMSTOF_1/muegeli_20240823_allsamples_v2/zip/20240823_001_autoQC03dia.d.zip p36124/Proteomics/TIMSTOF_1/muegeli_20240823_allsamples_v2/zip/20240823_009_autoQC03dia.d.zip p36124/Proteomics/TIMSTOF_1/muegeli_20240823_allsamples_v2/zip/20240823_024_autoQC03dia.d.zip NA p36124/Proteomics/TIMSTOF_1/muegeli_20240823_allsamples_v2/zip/20240823_040_autoQC03dia.d.zip p36124/Proteomics/TIMSTOF_1/muegeli_20240823_allsamples_v2/zip/20240823_056_autoQC03dia.d.zip p36124/Proteomics/TIMSTOF_1/muegeli_20240823_allsamples_v2/zip/20240823_072_autoQC03dia.d.zip NA input timeRange: 7776000 | timeMin: 2024-08-19 06:12:02.807 | timeMax: 2024-08-28 06:11:34.1 | timeDiff: 777571.292999983 nFacets: 0 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-22 06:13:21.79 | timeMax: 2024-08-28 06:11:34.1 | timeDiff: 518292.309999943 nFacets: 0 nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... p36124/Proteomics/TIMSTOF_1/muegeli_20240823_allsamples_v2/zip/20240823_009_autoQC03dia.d.zip NA p36124/Proteomics/TIMSTOF_1/muegeli_20240823_allsamples_v2/zip/20240823_009_autoQC03dia.d.zip p36124/Proteomics/TIMSTOF_1/muegeli_20240823_allsamples_v2/zip/20240823_001_autoQC03dia.d.zip NA p36124/Proteomics/TIMSTOF_1/muegeli_20240823_allsamples_v2/zip/20240823_072_autoQC03dia.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-29 11:13:07.364423 | timeMax: 2024-08-28 11:13:07.365102 | timeDiff: 5184000.00067878 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-06-29 09:13:07.364 | timeMax: 2024-08-28 09:13:07.365 | timeDiff: 5184000.00099993 nFacets: 0 nFacets: 1 nrow dataFiltered(): 684 using 'ggh4x' package ... NA Execution halted Warning messages: 1: agg could not write to the given file 2: agg could not write to the given file 3: agg could not write to the given file 4: agg could not write to the given file