Listening on http://127.0.0.1:46483

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-07-01 15:22:11.805835 | timeMax: 2024-08-30 15:22:11.806416 | timeDiff: 5184000.00058055
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1168
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

    guide_axis_logticks

using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-07-01 13:22:11.806 | timeMax: 2024-08-30 13:22:11.806 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1168
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 1024
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-08-13 13:22:13.569 | timeMax: 2024-08-30 13:22:11.806 | timeDiff: 1468798.23699999
nFacets: 4
nrow dataFiltered(): 320
using 'ggh4x' package ...
Warning: Removed 3 rows containing missing values or values outside the scale
range (`geom_point()`).
p26109/Proteomics/FUSION_2/jascot_20240829_DDA_runs/20240829_007_autoQC01.raw
p26109/Proteomics/FUSION_2/jascot_20240829_DDA_runs/20240829_001_autoQC01.raw
p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_019_autoQC01.raw
p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_025_autoQC01.raw
p3000/Proteomics/FUSION_2/chiawei_20240826/20240826_001_autoQC01.raw
p3000/Proteomics/FUSION_2/chiawei_20240826/20240826_003_autoQC01.raw
p26109/Proteomics/FUSION_2/jascot_20240829_DDA_runs/20240829_001_autoQC01.raw
p26109/Proteomics/FUSION_2/jascot_20240829_DDA_runs/20240829_007_autoQC01.raw
NA
p26109/Proteomics/FUSION_2/jascot_20240829_DDA_runs/20240829_014_autoQC01.raw
p26109/Proteomics/FUSION_2/jascot_20240829_DDA_runs/20240829_007_autoQC01.raw
NA
vals$rawrr: TRUE
p26109/Proteomics/FUSION_2/jascot_20240829_DDA_runs/20240829_001_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p26109/Proteomics/FUSION_2/jascot_20240829_DDA_runs/20240829_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p26109/Proteomics/FUSION_2/jascot_20240829_DDA_runs/20240829_001_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
plotClick: 
p26109/Proteomics/FUSION_2/jascot_20240829_DDA_runs/20240829_014_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p26109/Proteomics/FUSION_2/jascot_20240829_DDA_runs/20240829_014_autoQC01.raw
Reading raw file: /srv/www/htdocs//p26109/Proteomics/FUSION_2/jascot_20240829_DDA_runs/20240829_014_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
vals$rawrr: FALSE
vals$rawDiag: TRUE
plotChargeState
reading index for 20240829_014_autoQC01.raw...

plotScanTime
plotPrecursorHeatmap
plotChargeState
plotCycleLoad
`geom_smooth()` using formula = 'y ~ x'
plotMassDistribution
vals$rawDiag: FALSE
vals$rawrr: TRUE
vals$rawDiag: TRUE
plotChargeState


Execution halted