Listening on http://127.0.0.1:38595

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-07-19 15:20:00.508922 | timeMax: 2024-09-17 15:20:00.509505 | timeDiff: 5184000.00058317
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1280
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

    guide_axis_logticks

using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-07-19 13:20:00.509 | timeMax: 2024-09-17 13:20:00.51 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1280
using 'ggh4x' package ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 306
using 'ggh4x' package ...
nrow dataFiltered(): 338
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 260
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 0
NA
nFacets: 4
nrow dataFiltered(): 656
using 'ggh4x' package ...
Warning: Removed 35 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning: Removed 10 rows containing missing values or values outside the scale
range (`geom_line()`).
p3000/Proteomics/QEXACTIVE_1/analytic_20240917/20240917_C3000_002_autoQC01.raw
p36271/Proteomics/QEXACTIVE_1/analytic_20240910/20240911_C36271_001_autoQC01.raw
NA
p3000/Proteomics/QEXACTIVE_1/analytic_20240917/20240917_C3000_002_autoQC01.raw
NA
p3000/Proteomics/QEXACTIVE_1/analytic_20240917/20240917_C3000_002_autoQC01.raw
p3000/Proteomics/QEXACTIVE_1/analytic_20240917/20240917_C3000_002_autoQC01.raw
p3000/Proteomics/QEXACTIVE_1/analytic_20240917/20240917_C3000_002_autoQC01.raw
p3000/Proteomics/QEXACTIVE_1/analytic_20240917/20240917_C3000_002_autoQC01.raw
NA
p36271/Proteomics/QEXACTIVE_1/analytic_20240916/20240916_C36271_007_autoQC03dda.raw
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-07-19 16:05:48.72031 | timeMax: 2024-09-17 16:05:48.720897 | timeDiff: 5184000.00058746
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 656
using 'ggh4x' package ...
Warning: Removed 35 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning: Removed 10 rows containing missing values or values outside the scale
range (`geom_line()`).
input timeRange: 7776000 | timeMin: 2024-07-19 14:05:48.72 | timeMax: 2024-09-17 14:05:48.721 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 656
using 'ggh4x' package ...
Warning: Removed 35 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning: Removed 10 rows containing missing values or values outside the scale
range (`geom_line()`).
p3000/Proteomics/QEXACTIVE_1/analytic_20240917/20240917_C3000_002_autoQC01.raw
NA
p3000/Proteomics/QEXACTIVE_1/analytic_20240917/20240917_C3000_002_autoQC01.raw
NA
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 260
using 'ggh4x' package ...
p36271/Proteomics/QEXACTIVE_1/analytic_20240916/20240916_C36271_007_autoQC03dda.raw
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-07-19 16:28:11.47636 | timeMax: 2024-09-17 16:28:11.476924 | timeDiff: 5184000.00056362
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 656
using 'ggh4x' package ...
Warning: Removed 35 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning: Removed 10 rows containing missing values or values outside the scale
range (`geom_line()`).
input timeRange: 7776000 | timeMin: 2024-07-19 14:28:11.476 | timeMax: 2024-09-17 14:28:11.477 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 656
using 'ggh4x' package ...
Warning: Removed 35 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning: Removed 10 rows containing missing values or values outside the scale
range (`geom_line()`).
NA
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 260
using 'ggh4x' package ...
NA
p36271/Proteomics/QEXACTIVE_1/analytic_20240916/20240916_C36271_007_autoQC03dda.raw


Execution halted