Listening on http://127.0.0.1:40019

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-05 09:21:40.238681 | timeMax: 2024-10-04 09:21:40.23927 | timeDiff: 5184000.00058866
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
input timeRange: 7776000 | timeMin: 2024-08-05 07:21:40.239 | timeMax: 2024-10-04 07:21:40.239 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 992
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

    guide_axis_logticks

using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values or values outside the scale
range (`geom_point()`).
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 234
using 'ggh4x' package ...
nrow dataFiltered(): 416
using 'ggh4x' package ...
p28115/Proteomics/FUSION_2/wzhong_20240930_20240930_ms0930/20240930_020_autoQC03dia.raw
NA
p36398/Proteomics/FUSION_2/chryssazog_20240927/20240927_007_autoQC03dda.raw
NA
p36398/Proteomics/FUSION_2/chryssazog_20240927/20240927_007_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p36398/Proteomics/FUSION_2/chryssazog_20240927/20240927_007_autoQC03dda.raw
plotClick: 
NA
p36398/Proteomics/FUSION_2/chryssazog_20240927/20240927_007_autoQC03dda.raw
NA
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-05 09:47:03.737863 | timeMax: 2024-10-04 09:47:03.738435 | timeDiff: 5184000.00057244
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 992
using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-08-05 07:47:03.738 | timeMax: 2024-10-04 07:47:03.738 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 992
using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values or values outside the scale
range (`geom_point()`).
fn has changed to NA
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nFacets: 4
Warning: Error in if: argument is of length zero
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  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-05 11:38:13.112211 | timeMax: 2024-10-04 11:38:13.112882 | timeDiff: 5184000.00067067
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 768
using 'ggh4x' package ...
Warning: Removed 39 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning: Removed 5 rows containing missing values or values outside the scale
range (`geom_line()`).
input timeRange: 7776000 | timeMin: 2024-08-05 09:38:13.112 | timeMax: 2024-10-04 09:38:13.113 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 768
using 'ggh4x' package ...
Warning: Removed 39 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning: Removed 5 rows containing missing values or values outside the scale
range (`geom_line()`).
nFacets: 4
nrow dataFiltered(): 1328
using 'ggh4x' package ...
p3000/Proteomics/LUMOS_2/pgehrig_20240930_Nic_Dimet/20241004_16_autoQC01.raw
p3000/Proteomics/LUMOS_2/pgehrig_20240930_Nic_Dimet/20241004_16_autoQC01.raw
nFacets: 2
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 252
using 'ggh4x' package ...
nrow dataFiltered(): 572
using 'ggh4x' package ...
NA
p3000/Proteomics/LUMOS_2/pgehrig_20240930_Nic_Dimet/20240930_15_autoQC03dda.raw
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 234
using 'ggh4x' package ...
nrow dataFiltered(): 416
using 'ggh4x' package ...
NA


Execution halted