Listening on http://127.0.0.1:41915 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 12:09:23.198133 | timeMax: 2024-10-08 12:09:23.198724 | timeDiff: 5184000.0005908 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1040 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 10:09:23.198 | timeMax: 2024-10-08 10:09:23.199 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 NA nrow dataFiltered(): 299 using 'ggh4x' package ... p36523/Proteomics/QEXACTIVE_1/analytic_20241007/20241007_C36523_008_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p36523/Proteomics/QEXACTIVE_1/analytic_20241007/20241007_C36523_008_autoQC03dda.raw input timeRange: 7776000 | timeMin: 2024-07-10 10:10:05.08581 | timeMax: 2024-10-08 10:09:23.199 | timeDiff: 7775958.11318994 nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-07-10 13:10:52.450583 | timeMax: 2024-10-08 10:09:23.199 | timeDiff: 7772310.74841714 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-07-10 11:10:52.451 | timeMax: 2024-10-08 10:09:23.199 | timeDiff: 7772310.74799991 plotClick: fn has changed to /srv/www/htdocs//p36453/Proteomics/QEXACTIVE_1/analytic_20241003/20241003_C36453_011_autoQC03dda.raw p36453/Proteomics/QEXACTIVE_1/analytic_20241003/20241003_C36453_011_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p36442/Proteomics/QEXACTIVE_1/analytic_20240930/20240930_C36442_007_autoQC03dda.raw p36442/Proteomics/QEXACTIVE_1/analytic_20240930/20240930_C36442_007_autoQC03dda.raw NA NA nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 61 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_line()`). p36367/Proteomics/QEXACTIVE_1/analytic_20240920/20240920_C36367_001_autoQC01.raw NA nFacets: 4 nrow dataFiltered(): 494 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 576 using 'ggh4x' package ... nrow dataFiltered(): 576 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240827_04_autoQC03dda_flex.raw Execution halted