Listening on http://127.0.0.1:34815 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-10 09:23:04.386425 | timeMax: 2024-10-09 09:23:04.387008 | timeDiff: 5184000.00058222 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-10 07:23:04.38643 | timeMax: 2024-10-09 07:23:04.38701 | timeDiff: 5184000.00058007 nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-10 07:23:04.386 | timeMax: 2024-10-09 07:23:04.387 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_011_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-10 09:34:53.139179 | timeMax: 2024-10-09 09:34:53.139762 | timeDiff: 5184000.00058246 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-10 10:23:41.179148 | timeMax: 2024-10-09 10:23:41.179737 | timeDiff: 5184000.00058866 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-10 08:23:41.179 | timeMax: 2024-10-09 08:23:41.18 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 1008 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). 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p36507/Proteomics/FUSION_2/analytic_20241008/20241008_C36507_001_autoQC01.raw p36376/Proteomics/FUSION_2/analytic_20241007/20241007_C36376_006_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-10 14:52:25.373054 | timeMax: 2024-10-09 14:52:25.373622 | timeDiff: 5184000.00056887 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-10 12:52:25.373 | timeMax: 2024-10-09 12:52:25.374 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_013_autoQC01.raw NA plotClick: fn has changed to /srv/www/htdocs//NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_013_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_013_autoQC01.raw NA vals$rawDiag: TRUE plotChargeState reading index for 20241008_013_autoQC01.raw... vals$rawDiag: FALSE vals$rawrr: TRUE plotClick: p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_013_autoQC01.raw vals$rawrr: FALSE vals$rawrr: TRUE vals$rawrr: FALSE vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_013_autoQC01.raw Plotting chromatograms ... Read 22032 items vals$rawrr: FALSE NA vals$rawrr: FALSE plotClick: p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_013_autoQC01.raw NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_013_autoQC01.raw NA Execution halted