Listening on http://127.0.0.1:40215 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-11 10:00:34.88227 | timeMax: 2024-10-10 10:00:34.883017 | timeDiff: 5184000.00074625 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 273 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 216 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 216 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-11 08:00:34.88227 | timeMax: 2024-10-10 08:00:34.88302 | timeDiff: 5184000.00074983 nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-11 08:00:34.882 | timeMax: 2024-10-10 08:00:34.883 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... p36331/Proteomics/EXPLORIS_1/huanliu_20241002_TMT10plex_12frac/20241002_017_autoQC03dda.raw NA nFacets: 4 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_06_autoQC03dda_flex.raw nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 NA p36531/Proteomics/QEXACTIVE_1/analytic_20241008/20241008_C36531_009_autoQC03dda.raw nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... p36331/Proteomics/EXPLORIS_1/huanliu_20241002_TMT10plex_12frac/20241002_017_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/lkunz_20240930/20240930_003_autoQC03dia.raw nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 594 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-22 08:00:38.431 | timeMax: 2024-10-10 08:00:34.883 | timeDiff: 6911996.4519999 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 882 using 'ggh4x' package ... p3000/Proteomics/TIMSTOF_1/spfammatter_20241009/zip/20241004_001_autoQC03dia.d.zip input timeRange: 7776000 | timeMin: 2024-07-12 08:37:07.85114 | timeMax: 2024-10-10 08:00:34.883 | timeDiff: 7773807.03186011 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 990 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-12 11:37:17.26357 | timeMax: 2024-10-10 08:00:34.883 | timeDiff: 7770197.6194303 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 990 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-12 09:37:17.264 | timeMax: 2024-10-10 08:00:34.883 | timeDiff: 7770197.61899996 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-11 10:40:51.497965 | timeMax: 2024-10-10 10:40:51.498554 | timeDiff: 5184000.00058866 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1184 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1184 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-11 08:40:51.498 | timeMax: 2024-10-10 08:40:51.499 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1184 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... p3127/Proteomics/LUMOS_2/mesche_20241008/20241008_001_autoQC01_20241009191632.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/mesche_20241008/20241008_001_autoQC01_20241009191632.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/mesche_20241008/20241008_001_autoQC01_20241009191632.raw Plotting chromatograms ... Read 22032 items Execution halted