Listening on http://127.0.0.1:34953

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-15 14:21:59.003037 | timeMax: 2024-10-14 14:21:59.003639 | timeDiff: 5184000.00060129
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
input timeRange: 7776000 | timeMin: 2024-08-15 12:21:59.00304 | timeMax: 2024-10-14 12:21:59.00364 | timeDiff: 5184000.00059986
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 182
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 288
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 288
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

    guide_axis_logticks

using 'ggh4x' package ...
nrow dataFiltered(): 182
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-15 12:21:59.003 | timeMax: 2024-10-14 12:21:59.004 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 182
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 288
using 'ggh4x' package ...
NA
p3000/Proteomics/EXPLORIS_2/lkunz_20241007/20241007_002_autoQC03dda.raw
NA
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
autoQC01 module APEX wide nrow: 280874
autoQC01 module APEX long nrow: 0
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
autoQC01 module APEX long nrow: 900
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 2 rows containing missing values or values outside the scale
range (`geom_point()`).
plotClick: 
fn has changed to /srv/www/htdocs//NA
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20240826/20240826_002_autoQC03dda.raw
p3000/Proteomics/EXPLORIS_2/lkunz_20240826/20240826_002_autoQC03dda.raw
NA
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-15 15:30:25.670505 | timeMax: 2024-10-14 15:30:25.671092 | timeDiff: 5184000.00058651
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
input timeRange: 7776000 | timeMin: 2024-08-15 13:30:25.671 | timeMax: 2024-10-14 13:30:25.671 | timeDiff: 5184000
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1200
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1200
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1728908514733739000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-15 15:53:49.360298 | timeMax: 2024-10-14 15:53:49.360889 | timeDiff: 5184000.0005908
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 195
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 288
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 288
using 'ggh4x' package ...
nrow dataFiltered(): 195
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-15 13:53:49.3603 | timeMax: 2024-10-14 13:53:49.36089 | timeDiff: 5184000.00058985
nFacets: 1
nrow dataFiltered(): 195
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 288
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-15 13:53:49.36 | timeMax: 2024-10-14 13:53:49.361 | timeDiff: 5184000.00100017
nFacets: 1
nrow dataFiltered(): 195
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 288
using 'ggh4x' package ...
NA
p36535/Proteomics/EXPLORIS_2/analytic_20241011/20241011_C36535_019_autoQC03dia.raw
NA
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1728914025416894000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-15 16:01:51.581902 | timeMax: 2024-10-14 16:01:51.582496 | timeDiff: 5184000.00059366
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 195
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 306
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 306
using 'ggh4x' package ...
nrow dataFiltered(): 195
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-15 14:01:51.5819 | timeMax: 2024-10-14 14:01:51.5825 | timeDiff: 5184000.0006001
nFacets: 1
nrow dataFiltered(): 195
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 306
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-15 14:01:51.582 | timeMax: 2024-10-14 14:01:51.583 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 195
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 306
using 'ggh4x' package ...
p3000/Proteomics/EXPLORIS_2/lkunz_20241014/20241014_002_autoQC03dda.raw
NA
p3000/Proteomics/EXPLORIS_2/lkunz_20241014/20241014_003_autoQC03dia.raw
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1728914507679238000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-15 16:05:49.090669 | timeMax: 2024-10-14 16:05:49.091305 | timeDiff: 5184000.00063634
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1200
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1200
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-15 14:05:49.091 | timeMax: 2024-10-14 14:05:49.091 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1200
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1728912621769374000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 195
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 306
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 306
using 'ggh4x' package ...
nrow dataFiltered(): 195
using 'ggh4x' package ...
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-15 16:42:23.436225 | timeMax: 2024-10-14 16:42:23.436823 | timeDiff: 5184000.00059843
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1200
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1200
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-15 14:42:23.436 | timeMax: 2024-10-14 14:42:23.437 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1200
using 'ggh4x' package ...
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1728914745572887000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-16 08:24:46.353252 | timeMax: 2024-10-15 08:24:46.353848 | timeDiff: 5184000.00059605
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1168
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1168
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-16 06:24:46.353 | timeMax: 2024-10-15 06:24:46.354 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1168
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1728916939605409000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-17 11:57:08.312941 | timeMax: 2024-10-16 11:57:08.313523 | timeDiff: 5184000.00058222
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1088
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1088
using 'ggh4x' package ...
Warning: Removed 5 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-08-17 09:57:08.313 | timeMax: 2024-10-16 09:57:08.314 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1088
using 'ggh4x' package ...
Warning: Removed 5 rows containing missing values or values outside the scale
range (`geom_point()`).
p3000/Proteomics/FUSION_2/chiawei_20240819/20240819_001_autoQC01.raw
NA
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 312
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 234
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 234
using 'ggh4x' package ...
nrow dataFiltered(): 312
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1729072624859623000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-18 15:03:42.536958 | timeMax: 2024-10-17 15:03:42.537534 | timeDiff: 5184000.00057554
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1184
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1184
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-18 13:03:42.537 | timeMax: 2024-10-17 13:03:42.538 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1184
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 1040
using 'ggh4x' package ...
Warning: Removed 3 rows containing missing values or values outside the scale
range (`geom_point()`).
p28115/Proteomics/EXPLORIS_1/wzhong_20241015_main_trial1_Oct16/20241015_011_autoQC01.raw
p28115/Proteomics/EXPLORIS_1/wzhong_20241015_main_trial1_Oct16/20241015_006_autoQC01.raw
p28115/Proteomics/EXPLORIS_1/wzhong_20241015_main_trial1_Oct16/20241015_001_autoQC01_20241016170249.raw
p28115/Proteomics/EXPLORIS_1/wzhong_20241015_main_trial1_Oct16/20241015_001_autoQC01_20241016130941.raw
p28115/Proteomics/EXPLORIS_1/wzhong_20241015_main_trial1_Oct16/20241015_001_autoQC01.raw
NA
p3000/Proteomics/EXPLORIS_1/lkunz_20241014/20241014_004_autoQC01.raw
p28115/Proteomics/EXPLORIS_1/wzhong_20241015_main_trial1_Oct16/20241015_001_autoQC01.raw
p28115/Proteomics/EXPLORIS_1/wzhong_20241015_main_trial1_Oct16/20241015_001_autoQC01_20241016130941.raw
p28115/Proteomics/EXPLORIS_1/wzhong_20241015_main_trial1_Oct16/20241015_001_autoQC01_20241016170249.raw
p28115/Proteomics/EXPLORIS_1/wzhong_20241015_main_trial1_Oct16/20241015_006_autoQC01.raw
p28115/Proteomics/EXPLORIS_1/wzhong_20241015_main_trial1_Oct16/20241015_011_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p28115/Proteomics/EXPLORIS_1/wzhong_20241015_main_trial1_Oct16/20241015_011_autoQC01.raw
NA
vals$rawrr: TRUE
Reading raw file: /srv/www/htdocs//p28115/Proteomics/EXPLORIS_1/wzhong_20241015_main_trial1_Oct16/20241015_011_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1729170219060817000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1728973482654640000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted