Listening on http://127.0.0.1:43515 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-24 13:47:56.812549 | timeMax: 2024-10-23 13:47:56.813142 | timeDiff: 5184000.00059295 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1168 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-24 11:47:56.813 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... NA p36528/Proteomics/EXPLORIS_2/analytic_20241022/20241022_C36528_013_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p36528/Proteomics/EXPLORIS_2/analytic_20241022/20241022_C36528_013_autoQC01.raw NA input timeRange: 7776000 | timeMin: 2024-07-25 11:47:58.26164 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775998.55136013 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:48:25.614696 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775971.1983037 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:48:25.615 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775971.19799995 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:48:27.543556 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775969.26944375 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:48:27.544 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775969.26900005 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:48:29.396779 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775967.4162209 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:48:29.397 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775967.41599989 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:48:31.512893 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775965.30010724 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:48:31.513 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775965.29999995 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:48:33.444975 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775963.3680253 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:48:33.445 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775963.36800003 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:48:35.365836 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775961.44716382 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:48:35.366 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775961.44700003 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:48:37.239355 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775959.57364464 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:48:37.239 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775959.57399988 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:48:39.111002 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775957.701998 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:48:39.111 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775957.7019999 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:48:41.132789 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775955.68021083 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:48:41.133 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775955.68000007 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:48:42.99185 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775953.82114983 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:48:42.992 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775953.82099986 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:48:44.960003 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775951.85299683 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:48:44.96 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775951.85299993 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:48:46.893303 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775949.91969728 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:48:46.893 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775949.92000008 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:48:49.031814 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775947.78118587 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:48:49.032 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775947.7809999 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:48:50.847867 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775945.96513319 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:48:50.848 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775945.96499991 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:48:52.888137 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775943.9248631 p36528/Proteomics/EXPLORIS_2/analytic_20241022/20241022_C36528_013_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:48:52.888 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775943.92499995 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:48:54.714457 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775942.09854269 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:48:54.714 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775942.09899998 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:48:56.56734 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775940.24566007 NA nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:48:56.567 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775940.24600005 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:48:58.568734 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775938.24426579 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:48:58.569 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775938.24399996 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:49:00.438656 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775936.37434435 p36528/Proteomics/EXPLORIS_2/analytic_20241022/20241022_C36528_002_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:49:00.439 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775936.37400007 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:49:02.376339 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775934.43666077 p36528/Proteomics/EXPLORIS_2/analytic_20241022/20241022_C36528_002b_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:49:02.376 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775934.43700004 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:49:04.46913 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775932.34387016 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:49:04.469 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775932.34399986 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:49:06.315603 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775930.49739695 NA nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:49:06.316 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775930.49699998 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:49:08.196391 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775928.6166091 Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 403 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 414 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 403 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:49:08.19639 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775928.61661005 nFacets: 1 nrow dataFiltered(): 403 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 14:49:09.264519 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7772327.54848123 nFacets: 1 nrow dataFiltered(): 403 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 11:49:08.196 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7775928.61699986 nFacets: 1 nrow dataFiltered(): 403 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 14:49:10.230134 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7772326.58286643 nFacets: 1 nrow dataFiltered(): 403 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 12:49:10.23 | timeMax: 2024-10-23 11:47:56.813 | timeDiff: 7772326.58299994 nFacets: 1 nrow dataFiltered(): 403 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/spfammatter_20241021/20241021_002_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/spfammatter_20241021/20241021_002_autoQC03dda.raw NA NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1729684072559035000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Execution halted