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Attaching package: 'shinydashboard'

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input timeRange: 7776000 | timeMin: 2024-08-26 16:43:32.792643 | timeMax: 2024-10-25 16:43:32.793231 | timeDiff: 5184000.00058818
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

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vals$rawrr: FALSE
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Loading required package: ggh4x
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Attaching package: 'ggh4x'

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using 'ggh4x' package ...
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reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
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  problems(dat)
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p3000/Proteomics/EXPLORIS_1/cfortes_20241024/20241024_004_autoQC03dda.raw
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input timeRange: 7776000 | timeMin: 2024-08-27 07:23:40.696269 | timeMax: 2024-10-26 07:23:40.69684 | timeDiff: 5184000.00057077
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using 'ggh4x' package ...
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input timeRange: 7776000 | timeMin: 2024-08-27 05:23:40.696 | timeMax: 2024-10-26 05:23:40.697 | timeDiff: 5184000.00099993
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nrow dataFiltered(): 1040
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values or values outside the scale
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Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
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  problems(dat)
nFacets: 1
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using 'ggh4x' package ...
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using 'ggh4x' package ...
Warning in file(con, "w") :
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Warning: Error in file: cannot open the connection
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   1: runApp
NA
plotClick: 
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p36620/Proteomics/EXPLORIS_1/analytic_20241024/20241024_C36620_008_autoQC03dia.raw
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plotClick: 
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p36671/Proteomics/EXPLORIS_1/analytic_20241023/20241023_C36671_007_autoQC03dia.raw
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
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input timeRange: 7776000 | timeMin: 2024-08-27 11:58:49.423282 | timeMax: 2024-10-26 11:58:49.423853 | timeDiff: 5184000.0005703
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vals$rawrr: FALSE
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NA
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
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nrow dataFiltered(): 13
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nrow dataFiltered(): 522
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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nrow dataFiltered(): 522
using 'ggh4x' package ...
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using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
NA
input timeRange: 7776000 | timeMin: 2024-08-14 09:59:03.078 | timeMax: 2024-10-26 09:58:49.424 | timeDiff: 6307186.34599996
nrow dataFiltered(): 13
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
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using 'ggh4x' package ...
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input timeRange: 7776000 | timeMin: 2024-10-15 09:59:03.078 | timeMax: 2024-10-26 09:58:49.424 | timeDiff: 950386.345999956
nrow dataFiltered(): 13
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
nrow dataFiltered(): 90
using 'ggh4x' package ...
nFacets: 1
input timeRange: 7776000 | timeMin: 2024-08-05 09:59:18.723 | timeMax: 2024-10-26 09:58:49.424 | timeDiff: 7084770.70099998
nrow dataFiltered(): 13
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
nrow dataFiltered(): 864
using 'ggh4x' package ...
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NA
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nrow dataFiltered(): 0
Warning in file(con, "w") :
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Warning: Error in file: cannot open the connection
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
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Warning: Error in if: argument is of length zero
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input timeRange: 7776000 | timeMin: 2024-08-29 09:14:00.674378 | timeMax: 2024-10-28 08:14:00.67495 | timeDiff: 5184000.00057173
nFacets: 4
Warning: Error in if: argument is of length zero
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nFacets: 4
vals$rawrr: FALSE
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nrow dataFiltered(): 1104
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nrow dataFiltered(): 1104
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-29 07:14:00.674 | timeMax: 2024-10-28 07:14:00.675 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1104
using 'ggh4x' package ...
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 156
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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nrow dataFiltered(): 324
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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nrow dataFiltered(): 324
using 'ggh4x' package ...
nrow dataFiltered(): 156
using 'ggh4x' package ...
NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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input timeRange: 7776000 | timeMin: 2024-08-29 10:26:03.33579 | timeMax: 2024-10-28 09:26:03.336365 | timeDiff: 5184000.00057483
nFacets: 4
Warning: Error in if: argument is of length zero
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nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1040
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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nrow dataFiltered(): 1040
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-08-29 08:26:03.336 | timeMax: 2024-10-28 08:26:03.336 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1040
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1729920216842423000.json': Permission denied
Warning: Error in file: cannot open the connection
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   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730103959657664000.json': Permission denied
Warning: Error in file: cannot open the connection
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   1: runApp
fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-29 12:14:38.454374 | timeMax: 2024-10-28 11:14:38.454951 | timeDiff: 5184000.00057745
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1104
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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nrow dataFiltered(): 1104
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-29 10:14:38.454 | timeMax: 2024-10-28 10:14:38.455 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1104
using 'ggh4x' package ...
Reading /scratch/DIAQC/qc/dump/comet.RData ...
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730110474967369000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
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  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-29 14:51:24.372664 | timeMax: 2024-10-28 13:51:24.37324 | timeDiff: 5184000.00057578
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
nFacets: 4
input timeRange: 7776000 | timeMin: 2024-08-29 12:51:24.373 | timeMax: 2024-10-28 12:51:24.373 | timeDiff: 5184000
nFacets: 4
vals$rawrr: FALSE
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nrow dataFiltered(): 1104
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nrow dataFiltered(): 1104
using 'ggh4x' package ...
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 156
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nrow dataFiltered(): 324
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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  169: ggplot2FUN
  168: renderPlot
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   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 324
using 'ggh4x' package ...
nrow dataFiltered(): 156
using 'ggh4x' package ...
NA
p3000/Proteomics/EXPLORIS_2/lkunz_20240923/20240923_002_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20240923/20240923_002_autoQC03dda.raw
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730119880646186000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
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fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-30 10:33:28.506212 | timeMax: 2024-10-29 09:33:28.506798 | timeDiff: 5184000.00058579
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
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  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1104
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1104
using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-08-30 08:33:28.506 | timeMax: 2024-10-29 08:33:28.507 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1104
using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values or values outside the scale
range (`geom_point()`).
p3000/Proteomics/FUSION_2/chiawei_20241028/20241028_001_autoQC01.raw
p36513/Proteomics/FUSION_2/josephinekempis_20241016/20241018_001_autoQC01.raw
p36513/Proteomics/FUSION_2/josephinekempis_20241016/20241018_001_autoQC01.raw
NA
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 312
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 216
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 216
using 'ggh4x' package ...
nrow dataFiltered(): 312
using 'ggh4x' package ...
p36662/Proteomics/FUSION_2/niklaus_20241025/20241025_011_autoQC03dda.raw
p36578/Proteomics/FUSION_2/rhweldon_20241015/20241015_011_autoQC03dda.raw
p36662/Proteomics/FUSION_2/niklaus_20241025/20241025_011_autoQC03dda.raw
NA
p3000/Proteomics/FUSION_2/chiawei_20241028/20241028_003_autoQC03dia.raw
NA
NA
p36376/Proteomics/FUSION_2/analytic_20241007/20241007_C36376_007_autoQC03dia.raw
p36507/Proteomics/FUSION_2/analytic_20241008/20241014_C36507_005_autoQC03dia.raw
p3000/Proteomics/FUSION_2/chiawei_20241028/20241028_003_autoQC03dia.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730190805033335000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Warning: Error in if: missing value where TRUE/FALSE needed
  1: runApp
input timeRange: 1209600 | timeMin: 2024-10-22 11:04:54.804539 | timeMax: 2024-10-29 10:04:54.804581 | timeDiff: 604800.000042677
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730192694799246000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-30 11:21:23.64171 | timeMax: 2024-10-29 10:21:23.642284 | timeDiff: 5184000.00057411
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1104
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1104
using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-08-30 09:21:23.642 | timeMax: 2024-10-29 09:21:23.642 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1104
using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values or values outside the scale
range (`geom_point()`).
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730193680092598000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-30 18:46:07.387746 | timeMax: 2024-10-29 17:46:07.388322 | timeDiff: 5184000.0005765
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 156
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 342
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 342
using 'ggh4x' package ...
nrow dataFiltered(): 156
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-30 16:46:07.38775 | timeMax: 2024-10-29 16:46:07.38832 | timeDiff: 5184000.00057006
nFacets: 1
nrow dataFiltered(): 156
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 342
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-30 16:46:07.388 | timeMax: 2024-10-29 16:46:07.388 | timeDiff: 5184000
nFacets: 1
nrow dataFiltered(): 156
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 342
using 'ggh4x' package ...
NA
NA
p36528/Proteomics/EXPLORIS_2/analytic_20241022/20241022_C36528_090_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p36528/Proteomics/EXPLORIS_2/analytic_20241022/20241022_C36528_090_autoQC03dia.raw
NA
plotClick: 
fn has changed to /srv/www/htdocs//p36528/Proteomics/EXPLORIS_2/analytic_20241022/20241022_C36528_046_autoQC03dia.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730099637184153000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
p36528/Proteomics/EXPLORIS_2/analytic_20241022/20241022_C36528_046_autoQC03dia.raw
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-30 23:52:58.131417 | timeMax: 2024-10-29 22:52:58.132665 | timeDiff: 5184000.00124836
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 234
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 288
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 288
using 'ggh4x' package ...
nrow dataFiltered(): 234
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-30 21:52:58.13142 | timeMax: 2024-10-29 21:52:58.13267 | timeDiff: 5184000.00125003
nFacets: 1
nrow dataFiltered(): 234
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 288
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-30 21:52:58.131 | timeMax: 2024-10-29 21:52:58.133 | timeDiff: 5184000.00199986
nFacets: 1
nrow dataFiltered(): 234
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 288
using 'ggh4x' package ...
NA
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20241014/20241014_002_autoQC03dda.raw
p3000/Proteomics/EXPLORIS_1/lkunz_20241014/20241014_002_autoQC03dda.raw
NA
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241021_002_autoQC03dda.raw
p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241021_002_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20241014/20241014_002_autoQC03dda.raw
p3000/Proteomics/EXPLORIS_1/lkunz_20241014/20241014_002_autoQC03dda.raw
NA
plotClick: 
fn has changed to /srv/www/htdocs//NA
NA
plotClick: 
plotClick: 
p28115/Proteomics/EXPLORIS_1/wzhong_20241015_main_trial1_Oct16/20241015_048_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p28115/Proteomics/EXPLORIS_1/wzhong_20241015_main_trial1_Oct16/20241015_048_autoQC03dia.raw
p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241021_003r_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241021_003r_autoQC03dia.raw
NA
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241023_004_autoQC03dia.raw
p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241023_004_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//NA
NA
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/cfortes_20241024/20241024_005_autoQC03dia.raw
p3000/Proteomics/EXPLORIS_1/cfortes_20241024/20241024_005_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//NA
NA
p3000/Proteomics/EXPLORIS_1/lkunz_20241014/20241014_003_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20241014/20241014_003_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p28115/Proteomics/EXPLORIS_1/wzhong_20241015_main_trial1_Oct16/20241015_048_autoQC03dia.raw
p28115/Proteomics/EXPLORIS_1/wzhong_20241015_main_trial1_Oct16/20241015_048_autoQC03dia.raw
NA
plotClick: 
fn has changed to /srv/www/htdocs//NA
plotClick: 
fn has changed to /srv/www/htdocs//p28115/Proteomics/EXPLORIS_1/wzhong_20241015_main_trial1_Oct16/20241015_048_autoQC03dia.raw
p28115/Proteomics/EXPLORIS_1/wzhong_20241015_main_trial1_Oct16/20241015_048_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241021_003r_autoQC03dia.raw
p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241021_003r_autoQC03dia.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730238772946486000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-01 10:46:21.519015 | timeMax: 2024-10-31 09:46:21.519933 | timeDiff: 5184000.0009172
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-01 10:46:25.237231 | timeMax: 2024-10-31 09:46:25.237804 | timeDiff: 5184000.00057364
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1104
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-09-01 08:46:21.519 | timeMax: 2024-10-31 08:46:21.52 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1104
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-09-01 08:46:25.23723 | timeMax: 2024-10-31 08:46:25.2378 | timeDiff: 5184000.00057006
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 143
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 342
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 1104
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-01 08:46:25.237 | timeMax: 2024-10-31 08:46:25.238 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 143
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nFacets: 1
nrow dataFiltered(): 342
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 342
using 'ggh4x' package ...
nrow dataFiltered(): 143
using 'ggh4x' package ...
nFacets: 0
nrow dataFiltered(): 0
nFacets: 1
nrow dataFiltered(): 684
using 'ggh4x' package ...
Warning: Error in graphics::plot.new: figure margins too large
  104: graphics::plot.new
  101: startPNG
  100: plotPNG
   99: resizeSavedPlot
   97: func
   95: f
   94: Reduce
   85: do
   84: hybrid_chain
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
NA
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240924/zip/20240924_003_autoQC03dia.d.zip
p36251/Proteomics/TIMSTOFFLEX_1/analytic_20240904_/zip/20240906_022_autoQC03dia.d.zip
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240924/zip/20240924_003_autoQC03dia.d.zip
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_002_autoQC03dia_00.d.zip
NA
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240924/zip/20240924_003_autoQC03dia.d.zip
NA
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240924/zip/20240924_003_autoQC03dia.d.zip
nrow dataFiltered(): 684
using 'ggh4x' package ...
NA
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240924/zip/20240924_003_autoQC03dia.d.zip
NA
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_002_autoQC03dia_00.d.zip
Warning: Error in graphics::plot.new: figure margins too large
  104: graphics::plot.new
  101: startPNG
  100: plotPNG
   99: resizeSavedPlot
   97: func
   95: f
   94: Reduce
   85: do
   84: hybrid_chain
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 684
using 'ggh4x' package ...
nrow dataFiltered(): 684
using 'ggh4x' package ...
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240924/zip/20240924_003_autoQC03dia.d.zip
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240924/zip/20240924_003_autoQC03dia.d.zip
NA
input timeRange: 7776000 | timeMin: 2024-09-11 08:46:27.427 | timeMax: 2024-10-31 08:46:25.238 | timeDiff: 4319997.81099987
nFacets: 0
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nFacets: 1
nrow dataFiltered(): 630
using 'ggh4x' package ...
nrow dataFiltered(): 630
using 'ggh4x' package ...
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20241017/zip/20241017_053_autoQC03dia_01.d.zip
NA
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240924/zip/20240924_003_autoQC03dia.d.zip
p36251/Proteomics/TIMSTOFFLEX_1/analytic_20240904_/zip/20240906_022_autoQC03dia.d.zip
NA
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240924/zip/20240924_003_autoQC03dia.d.zip
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_002_autoQC03dia_00.d.zip
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_257_autoQC03dia_05.d.zip
NA
nrow dataFiltered(): 630
using 'ggh4x' package ...
nrow dataFiltered(): 630
using 'ggh4x' package ...
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240924/zip/20240924_003_autoQC03dia.d.zip
NA
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240924/zip/20240924_003_autoQC03dia.d.zip
NA
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240924/zip/20240924_003_autoQC03dia.d.zip
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_002_autoQC03dia_00.d.zip
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20241017/zip/20241017_053_autoQC03dia_01.d.zip
NA
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20241017/zip/20241017_104_autoQC03dia_02.d.zip
NA
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20241017/zip/20241017_104_autoQC03dia_02.d.zip
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730364376154705000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730364381700133000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-01 15:39:43.037318 | timeMax: 2024-10-31 14:39:43.037896 | timeDiff: 5184000.00057769
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 4
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 260
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 216
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 216
using 'ggh4x' package ...
nrow dataFiltered(): 260
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-01 13:39:43.03732 | timeMax: 2024-10-31 13:39:43.0379 | timeDiff: 5184000.00057983
nFacets: 4
nrow dataFiltered(): 260
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 216
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-01 13:39:43.037 | timeMax: 2024-10-31 13:39:43.038 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 260
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 216
using 'ggh4x' package ...
NA
p36662/Proteomics/FUSION_2/niklaus_20241025/20241025_011_autoQC03dda.raw
p36662/Proteomics/FUSION_2/niklaus_20241025/20241025_011_autoQC03dda.raw
p36662/Proteomics/FUSION_2/niklaus_20241025/20241025_011_autoQC03dda.raw
NA
NA
p3000/Proteomics/FUSION_2/chiawei_20241028/20241028_003_autoQC03dia.raw
nFacets: 4
nrow dataFiltered(): 338
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 288
using 'ggh4x' package ...
p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241011_05_autoQC03dia_flex.raw
p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241011_04_autoQC03dda_from_scratch.raw
p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241011_04_autoQC03dda_from_scratch.raw
nFacets: 0
nrow dataFiltered(): 0
nFacets: 1
nrow dataFiltered(): 54
using 'ggh4x' package ...
Warning: Error in graphics::plot.new: figure margins too large
  104: graphics::plot.new
  101: startPNG
  100: plotPNG
   99: resizeSavedPlot
   97: func
   95: f
   94: Reduce
   85: do
   84: hybrid_chain
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  104: graphics::plot.new
  101: startPNG
  100: plotPNG
   99: resizeSavedPlot
   97: func
   95: f
   94: Reduce
   85: do
   84: hybrid_chain
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
NA
p35134/Proteomics/ASTRAL_1/tobiasko_20241011_VanquishNeoTrapElute/20241011_004_autoQC03dia.raw
nFacets: 4
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nFacets: 1
nrow dataFiltered(): 270
using 'ggh4x' package ...
nrow dataFiltered(): 1014
using 'ggh4x' package ...
NA
p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dia.raw
p3000/Proteomics/LUMOS_2/cfortes_20241030_autoQC/20241030_003_autoQC03dda.raw
NA
nFacets: 4
nrow dataFiltered(): 260
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 216
using 'ggh4x' package ...
p36662/Proteomics/FUSION_2/niklaus_20241025/20241025_011_autoQC03dda.raw
p36662/Proteomics/FUSION_2/niklaus_20241025/20241025_011_autoQC03dda.raw
NA
p36662/Proteomics/FUSION_2/niklaus_20241025/20241025_011_autoQC03dda.raw
NA
NA
p3000/Proteomics/FUSION_2/chiawei_20241028/20241028_003_autoQC03dia.raw
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730381977742449000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-01 21:51:01.482571 | timeMax: 2024-10-31 20:51:01.483149 | timeDiff: 5184000.00057817
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1104
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
input timeRange: 7776000 | timeMin: 2024-09-01 19:51:01.483 | timeMax: 2024-10-31 19:51:01.483 | timeDiff: 5184000
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 143
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 342
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 342
using 'ggh4x' package ...
nrow dataFiltered(): 143
using 'ggh4x' package ...
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730220363969839000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730404258073140000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted
Warning messages:
1: agg could not write to the given file 
2: agg could not write to the given file 
3: agg could not write to the given file 
4: agg could not write to the given file 
5: agg could not write to the given file 
6: agg could not write to the given file