Listening on http://127.0.0.1:46697

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-19 17:03:54.353801 | timeMax: 2024-11-18 16:03:54.354394 | timeDiff: 5184000.00059342
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
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  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 156
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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  169: ggplot2FUN
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  112: <reactive:plotObj>
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   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 396
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
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  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
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  112: <reactive:plotObj>
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    1: runApp
nrow dataFiltered(): 396
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

    guide_axis_logticks

using 'ggh4x' package ...
nrow dataFiltered(): 156
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-19 15:03:54.3538 | timeMax: 2024-11-18 15:03:54.35439 | timeDiff: 5184000.00058985
nFacets: 1
nrow dataFiltered(): 156
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 396
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-19 15:03:54.354 | timeMax: 2024-11-18 15:03:54.354 | timeDiff: 5184000
nFacets: 1
nrow dataFiltered(): 156
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 396
using 'ggh4x' package ...
p3000/Proteomics/EXPLORIS_2/lkunz_20241118/20241118_002_autoQC03dda.raw
p3000/Proteomics/EXPLORIS_2/lkunz_20241118/20241118_003_autoQC03dia.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1731942230171679000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-19 17:13:24.075288 | timeMax: 2024-11-18 16:13:24.075878 | timeDiff: 5184000.0005908
nFacets: 4
Warning: Error in if: argument is of length zero
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  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
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  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 156
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
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  112: <reactive:plotObj>
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   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 396
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
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   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 396
using 'ggh4x' package ...
nrow dataFiltered(): 156
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-19 15:13:24.07529 | timeMax: 2024-11-18 15:13:24.07588 | timeDiff: 5184000.00058985
nFacets: 1
nrow dataFiltered(): 156
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 396
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-19 15:13:24.075 | timeMax: 2024-11-18 15:13:24.076 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 156
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 396
using 'ggh4x' package ...
p3000/Proteomics/EXPLORIS_2/lkunz_20241111/20241111_002_autoQC03dda.raw
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p3000/Proteomics/EXPLORIS_2/lkunz_20241111/20241112_003_autoQC03dia.raw
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p36858/Proteomics/EXPLORIS_2/analytic_20241114/20241114_C36858_020_autoQC03dia.raw
p3000/Proteomics/EXPLORIS_2/lkunz_20241111/20241112_003_autoQC03dia.raw
p3000/Proteomics/EXPLORIS_2/lkunz_20241111/20241112_002_autoQC03dda.raw
p3000/Proteomics/EXPLORIS_2/lkunz_20241118/20241118_002_autoQC03dda.raw
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p3000/Proteomics/EXPLORIS_2/lkunz_20241118/20241118_003_autoQC03dia.raw
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p36858/Proteomics/EXPLORIS_2/analytic_20241114/20241114_C36858_020_autoQC03dia.raw
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p36858/Proteomics/EXPLORIS_2/analytic_20241114/20241114_C36858_020_autoQC03dia.raw
p3000/Proteomics/EXPLORIS_2/lkunz_20241111/20241111_003_autoQC03dia.raw
p3000/Proteomics/EXPLORIS_2/lkunz_20241111/20241112_003_autoQC03dia.raw
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p36858/Proteomics/EXPLORIS_2/analytic_20241114/20241114_C36858_020_autoQC03dia.raw
p3000/Proteomics/EXPLORIS_2/lkunz_20241118/20241118_003_autoQC03dia.raw
p3000/Proteomics/EXPLORIS_2/lkunz_20241111/20241111_002_autoQC03dda.raw
p3000/Proteomics/EXPLORIS_2/lkunz_20241111/20241112_002_autoQC03dda.raw
NA
p3000/Proteomics/EXPLORIS_2/lkunz_20241118/20241118_002_autoQC03dda.raw
NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
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  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-19 17:37:14.278965 | timeMax: 2024-11-18 16:37:14.279728 | timeDiff: 5184000.00076294
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
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  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 992
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  169: ggplot2FUN
  168: renderPlot
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    1: runApp
nrow dataFiltered(): 992
using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-09-19 15:37:14.279 | timeMax: 2024-11-18 15:37:14.28 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 992
using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values or values outside the scale
range (`geom_point()`).
NA
nrow dataFiltered(): 992
using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values or values outside the scale
range (`geom_point()`).
Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 416
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nrow dataFiltered(): 180
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
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    1: runApp
nrow dataFiltered(): 180
using 'ggh4x' package ...
nrow dataFiltered(): 416
using 'ggh4x' package ...
p3000/Proteomics/FUSION_2/chiawei_20241118/20241118_002_autoQC03dia.raw
NA
p3000/Proteomics/FUSION_2/chiawei_20241118/20241118_002_autoQC03dia.raw
nrow dataFiltered(): 324
using 'ggh4x' package ...
nrow dataFiltered(): 1092
using 'ggh4x' package ...
nFacets: 4
nFacets: 1
NA
p25334/Proteomics/LUMOS_2/dlesli_20241108_DLP252/20241111_015_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p25334/Proteomics/LUMOS_2/dlesli_20241108_DLP252/20241111_015_autoQC03dia.raw
p25334/Proteomics/LUMOS_2/dlesli_20241114_DLP252/20241119_030_autoQC03dda.raw
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1731944230489673000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-20 10:00:11.061498 | timeMax: 2024-11-19 09:00:11.062083 | timeDiff: 5184000.00058556
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1184
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
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   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1184
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-20 08:00:11.062 | timeMax: 2024-11-19 08:00:11.062 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1184
using 'ggh4x' package ...
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 156
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
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  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 414
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 414
using 'ggh4x' package ...
nrow dataFiltered(): 156
using 'ggh4x' package ...
p36887/Proteomics/EXPLORIS_2/analytic_20241118/20241118_C36887_012_autoQC03dda.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1731942800153550000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
nrow dataFiltered(): 156
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 156
using 'ggh4x' package ...
NA
p36887/Proteomics/EXPLORIS_2/analytic_20241118/20241118_C36887_012_autoQC03dda.raw
p36887/Proteomics/EXPLORIS_2/analytic_20241118/20241118_C36887_011_autoQC03dia.raw
NA
plotClick: 
fn has changed to /srv/www/htdocs//p36887/Proteomics/EXPLORIS_2/analytic_20241118/20241118_C36887_012_autoQC03dda.raw
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732003207584338000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted