Listening on http://127.0.0.1:36999

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-20 17:03:09.802631 | timeMax: 2024-11-19 16:03:09.803231 | timeDiff: 5184000.0006001
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
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  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 39
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 630
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 630
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

    guide_axis_logticks

using 'ggh4x' package ...
nrow dataFiltered(): 39
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-20 15:03:09.80263 | timeMax: 2024-11-19 15:03:09.80323 | timeDiff: 5184000.0006001
nFacets: 1
nrow dataFiltered(): 39
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 630
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-20 15:03:09.803 | timeMax: 2024-11-19 15:03:09.803 | timeDiff: 5184000
nFacets: 1
nrow dataFiltered(): 39
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 630
using 'ggh4x' package ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-20 17:03:28.440509 | timeMax: 2024-11-19 16:03:28.441109 | timeDiff: 5184000.00060058
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 39
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 630
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 630
using 'ggh4x' package ...
nrow dataFiltered(): 39
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-20 15:03:28.44051 | timeMax: 2024-11-19 15:03:28.44111 | timeDiff: 5184000.0006001
nFacets: 1
nrow dataFiltered(): 39
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 630
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-20 15:03:28.441 | timeMax: 2024-11-19 15:03:28.441 | timeDiff: 5184000
nFacets: 1
nrow dataFiltered(): 39
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 630
using 'ggh4x' package ...
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732028585503776000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
NA
plotClick: 
fn has changed to /srv/www/htdocs//NA
p36721/Proteomics/TIMSTOF_1/spfammatter_20241114/zip/20241114_001_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p36647/Proteomics/TIMSTOF_1/mtuchel_20241112_/zip/20241112_013_autoQC03dia.d.zip
p36647/Proteomics/TIMSTOF_1/mtuchel_20241112_/zip/20241112_013_autoQC03dia.d.zip
NA
plotClick: 
fn has changed to /srv/www/htdocs//p36721/Proteomics/TIMSTOF_1/spfammatter_20241114/zip/20241114_001_autoQC03dia.d.zip
p36721/Proteomics/TIMSTOF_1/spfammatter_20241114/zip/20241114_001_autoQC03dia.d.zip
fn has changed to NA
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fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-20 17:33:08.28742 | timeMax: 2024-11-19 16:33:08.28801 | timeDiff: 5184000.00059056
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 39
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 630
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 630
using 'ggh4x' package ...
nrow dataFiltered(): 39
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-20 15:33:08.28742 | timeMax: 2024-11-19 15:33:08.28801 | timeDiff: 5184000.00059009
nFacets: 1
nrow dataFiltered(): 39
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 630
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-20 15:33:08.287 | timeMax: 2024-11-19 15:33:08.288 | timeDiff: 5184000.00100017
nFacets: 1
nrow dataFiltered(): 39
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 630
using 'ggh4x' package ...
NA
p36721/Proteomics/TIMSTOF_1/spfammatter_20241114/zip/20241114_001_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p36721/Proteomics/TIMSTOF_1/spfammatter_20241114/zip/20241114_001_autoQC03dia.d.zip
nFacets: 1
nrow dataFiltered(): 990
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-21 15:33:09.74522 | timeMax: 2024-11-19 15:33:08.288 | timeDiff: 7775998.54278016
nFacets: 1
nrow dataFiltered(): 39
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 990
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-21 18:33:19.110677 | timeMax: 2024-11-19 15:33:08.288 | timeDiff: 7772389.17732334
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732028604191252000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
nFacets: 1
nrow dataFiltered(): 39
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 990
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-21 16:33:19.111 | timeMax: 2024-11-19 15:33:08.288 | timeDiff: 7772389.17700005
NA
p36355/Proteomics/TIMSTOF_1/analytic_20241015/zip/20241022_001_autoQC03dia_S1-A1_1_10678.d.zip
p36355/Proteomics/TIMSTOF_1/analytic_20241015/zip/20241015_009_autoQC03dia_S1-A3_1_10682.d.zip
NA
p36355/Proteomics/TIMSTOF_1/analytic_20241015/zip/20241015_009_autoQC03dia_S1-A3_1_10682.d.zip
NA
p29033/Proteomics/TIMSTOF_1/radhika_20241104_humanmyotubes_DIA_DDA/zip/20241104_001_autoQC03dia.d.zip
p36647/Proteomics/TIMSTOF_1/mtuchel_20241031_/zip/20241031_012r_autoQC03dia_S1-A12_1_10736.d.zip
p36647/Proteomics/TIMSTOF_1/mtuchel_20241024_/zip/20241024_001_autoQC03dia_S1-A1_1_10683.d.zip
p36647/Proteomics/TIMSTOF_1/mtuchel_20241024_/zip/20241024_012_autoQC03dia_S1-A12_1_10694.d.zip
p36721/Proteomics/TIMSTOF_1/saenz_20241029_/zip/20241029_001_autoQC03dia_S1-A1_1_10712.d.zip
p36355/Proteomics/TIMSTOF_1/analytic_20240924/zip/20240924_011_autoQC03dia.d.zip
NA
p36124/Proteomics/TIMSTOF_1/muegeli_20240823_allsamples_v2/zip/20240823_024_autoQC03dia.d.zip
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-20 19:36:29.241982 | timeMax: 2024-11-19 18:36:29.242597 | timeDiff: 5184000.00061488
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 39
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 648
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 648
using 'ggh4x' package ...
nrow dataFiltered(): 39
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-20 17:36:29.24198 | timeMax: 2024-11-19 17:36:29.2426 | timeDiff: 5184000.00062013
nFacets: 1
nrow dataFiltered(): 39
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 648
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-20 17:36:29.242 | timeMax: 2024-11-19 17:36:29.243 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 39
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 648
using 'ggh4x' package ...
p36884/Proteomics/TIMSTOF_1/john_20241119_/zip/20241119_001_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p36884/Proteomics/TIMSTOF_1/john_20241119_/zip/20241119_001_autoQC03dia.d.zip
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732030384491977000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-22 09:52:11.935775 | timeMax: 2024-11-21 08:52:11.936353 | timeDiff: 5184000.00057769
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 0
input timeRange: 7776000 | timeMin: 2024-09-22 07:52:11.936 | timeMax: 2024-11-21 07:52:11.936 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 0
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732037785588817000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-22 10:13:59.070579 | timeMax: 2024-11-21 09:13:59.071152 | timeDiff: 5184000.0005734
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 169
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 414
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 414
using 'ggh4x' package ...
nrow dataFiltered(): 169
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-22 08:13:59.07058 | timeMax: 2024-11-21 08:13:59.07115 | timeDiff: 5184000.00056982
nFacets: 1
nrow dataFiltered(): 169
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 414
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-22 08:13:59.071 | timeMax: 2024-11-21 08:13:59.071 | timeDiff: 5184000
nFacets: 1
nrow dataFiltered(): 169
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 414
using 'ggh4x' package ...
p36946/Proteomics/EXPLORIS_2/analytic_20241120/20241120_C36946_007_autoQC03dda.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732176835390906000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp