Listening on http://127.0.0.1:44641

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-22 15:59:19.626443 | timeMax: 2024-11-21 14:59:19.627037 | timeDiff: 5184000.00059366
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 0
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 648
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 648
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

    guide_axis_logticks

using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-22 13:59:19.62644 | timeMax: 2024-11-21 13:59:19.62704 | timeDiff: 5184000.0006001
nFacets: 0
nFacets: 1
nrow dataFiltered(): 648
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-22 13:59:19.626 | timeMax: 2024-11-21 13:59:19.627 | timeDiff: 5184000.00100017
nFacets: 0
nFacets: 1
nrow dataFiltered(): 648
using 'ggh4x' package ...
NA
p36884/Proteomics/TIMSTOF_1/john_20241119_/zip/20241119_001_autoQC03dia.d.zip
p36647/Proteomics/TIMSTOF_1/mtuchel_20241112_/zip/20241112_001_autoQC03dia.d.zip
p36698/Proteomics/TIMSTOF_1/makieva_20241108_/zip/20241108_001_autoQC03dia.d.zip
nrow dataFiltered(): 648
using 'ggh4x' package ...
NA
p36884/Proteomics/TIMSTOF_1/john_20241119_/zip/20241119_001_autoQC03dia.d.zip
p36647/Proteomics/TIMSTOF_1/mtuchel_20241112_/zip/20241112_013_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//NA
p36884/Proteomics/TIMSTOF_1/john_20241119_/zip/20241119_001_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p36884/Proteomics/TIMSTOF_1/john_20241119_/zip/20241119_001_autoQC03dia.d.zip
NA
plotClick: 
fn has changed to /srv/www/htdocs//p36647/Proteomics/TIMSTOF_1/mtuchel_20241112_/zip/20241112_013_autoQC03dia.d.zip
p36647/Proteomics/TIMSTOF_1/mtuchel_20241112_/zip/20241112_013_autoQC03dia.d.zip
NA
p36647/Proteomics/TIMSTOF_1/mtuchel_20241112_/zip/20241112_001_autoQC03dia.d.zip
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-22 19:52:33.824987 | timeMax: 2024-11-21 18:52:33.825562 | timeDiff: 5184000.00057435
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 0
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 684
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 684
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-22 17:52:33.82499 | timeMax: 2024-11-21 17:52:33.82556 | timeDiff: 5184000.00057006
nFacets: 0
nFacets: 1
nrow dataFiltered(): 684
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-22 17:52:33.825 | timeMax: 2024-11-21 17:52:33.826 | timeDiff: 5184000.00099993
nFacets: 0
nFacets: 1
nrow dataFiltered(): 684
using 'ggh4x' package ...
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732197555352790000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
plotClick: 
fn has changed to /srv/www/htdocs//p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_002_autoQC03dia.d.zip
p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_002_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_001_autoQC03dia.d.zip
p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_001_autoQC03dia.d.zip
nrow dataFiltered(): 684
using 'ggh4x' package ...
NA
plotClick: 
fn has changed to /srv/www/htdocs//p29033/Proteomics/TIMSTOF_1/radhika_20241104_humanmyotubes_DIA_DDA/zip/20241104_071_autoQC03dia.d.zip
p29033/Proteomics/TIMSTOF_1/radhika_20241104_humanmyotubes_DIA_DDA/zip/20241104_071_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_001_autoQC03dia.d.zip
p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_001_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_002_autoQC03dia.d.zip
p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_002_autoQC03dia.d.zip
NA
p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_001_autoQC03dia.d.zip
NA
p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_002_autoQC03dia.d.zip
plotClick: 
plotClick: 
fn has changed to /srv/www/htdocs//NA
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-22 21:52:41.783854 | timeMax: 2024-11-21 20:52:41.784433 | timeDiff: 5184000.0005784
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 169
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 414
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 414
using 'ggh4x' package ...
nrow dataFiltered(): 169
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-22 19:52:41.78385 | timeMax: 2024-11-21 19:52:41.78443 | timeDiff: 5184000.00057983
nFacets: 1
nrow dataFiltered(): 169
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 414
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-22 19:52:41.784 | timeMax: 2024-11-21 19:52:41.784 | timeDiff: 5184000
nFacets: 1
nrow dataFiltered(): 169
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 414
using 'ggh4x' package ...
nFacets: 0
nrow dataFiltered(): 0
nFacets: 1
nrow dataFiltered(): 684
using 'ggh4x' package ...
Warning: Error in graphics::plot.new: figure margins too large
  104: graphics::plot.new
  101: startPNG
  100: plotPNG
   99: resizeSavedPlot
   97: func
   95: f
   94: Reduce
   85: do
   84: hybrid_chain
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
NA
plotClick: 
fn has changed to /srv/www/htdocs//p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_002_autoQC03dia.d.zip
p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_002_autoQC03dia.d.zip
NA
p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_001_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_001_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p36884/Proteomics/TIMSTOF_1/john_20241119_/zip/20241119_001_autoQC03dia.d.zip
p36884/Proteomics/TIMSTOF_1/john_20241119_/zip/20241119_001_autoQC03dia.d.zip
NA
plotClick: 
fn has changed to /srv/www/htdocs//NA
p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_001_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_001_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_002_autoQC03dia.d.zip
p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_002_autoQC03dia.d.zip
NA
p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_002_autoQC03dia.d.zip
NA
p36647/Proteomics/TIMSTOF_1/mtuchel_20241029_/zip/20241029_007_autoQC03dia_S1-A9_1_10720.d.zip
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-22 23:15:43.590915 | timeMax: 2024-11-21 22:15:43.5915 | timeDiff: 5184000.0005846
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 0
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 684
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 684
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-22 21:15:43.59092 | timeMax: 2024-11-21 21:15:43.5915 | timeDiff: 5184000.00058007
nFacets: 0
nFacets: 1
nrow dataFiltered(): 684
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-22 21:15:43.591 | timeMax: 2024-11-21 21:15:43.592 | timeDiff: 5184000.00099993
nFacets: 0
nFacets: 1
nrow dataFiltered(): 684
using 'ggh4x' package ...
NA
plotClick: 
fn has changed to /srv/www/htdocs//p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_002_autoQC03dia.d.zip
p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_002_autoQC03dia.d.zip
NA
plotClick: 
p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_002_autoQC03dia.d.zip
p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_001_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_001_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p36884/Proteomics/TIMSTOF_1/john_20241119_/zip/20241119_001_autoQC03dia.d.zip
p36884/Proteomics/TIMSTOF_1/john_20241119_/zip/20241119_001_autoQC03dia.d.zip
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732218758015009000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732223739839151000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-23 07:32:20.766253 | timeMax: 2024-11-22 06:32:20.766828 | timeDiff: 5184000.00057483
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 0
input timeRange: 7776000 | timeMin: 2024-09-23 05:32:20.766 | timeMax: 2024-11-22 05:32:20.767 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 0
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 684
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 684
using 'ggh4x' package ...
plotClick: 
fn has changed to /srv/www/htdocs//p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_002_autoQC03dia.d.zip
p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_002_autoQC03dia.d.zip
NA
plotClick: 
p36884/Proteomics/TIMSTOF_1/gasic_20241121_/zip/20241121_002_autoQC03dia.d.zip
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-23 14:01:35.034852 | timeMax: 2024-11-22 13:01:35.03544 | timeDiff: 5184000.00058746
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 0
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 702
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 702
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-23 12:01:35.03485 | timeMax: 2024-11-22 12:01:35.03544 | timeDiff: 5184000.00058985
nFacets: 0
nFacets: 1
nrow dataFiltered(): 702
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-23 12:01:35.035 | timeMax: 2024-11-22 12:01:35.035 | timeDiff: 5184000
nFacets: 0
nFacets: 1
nrow dataFiltered(): 702
using 'ggh4x' package ...
plotClick: 
fn has changed to /srv/www/htdocs//p36969/Proteomics/TIMSTOF_1/saenz_20241121_/zip/20241121_001_autoQC03dia.d.zip
p36969/Proteomics/TIMSTOF_1/saenz_20241121_/zip/20241121_001_autoQC03dia.d.zip
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732253537268614000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732276891587246000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732211543978843000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted
Warning messages:
1: agg could not write to the given file 
2: agg could not write to the given file 
3: agg could not write to the given file 
4: agg could not write to the given file 
5: agg could not write to the given file 
6: agg could not write to the given file