Listening on http://127.0.0.1:45533

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-27 10:22:02.860127 | timeMax: 2024-11-26 09:22:02.861623 | timeDiff: 5184000.00149632
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
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  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 156
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
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  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 414
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-09-27 08:22:02.86013 | timeMax: 2024-11-26 08:22:02.86162 | timeDiff: 5184000.00149035
nFacets: 1
nrow dataFiltered(): 156
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  169: ggplot2FUN
  168: renderPlot
  166: func
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   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nFacets: 1
nrow dataFiltered(): 414
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
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   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-09-27 08:22:02.86 | timeMax: 2024-11-26 08:22:02.862 | timeDiff: 5184000.00200009
nFacets: 1
nrow dataFiltered(): 156
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nFacets: 1
nrow dataFiltered(): 414
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  169: ggplot2FUN
  168: renderPlot
  166: func
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  112: <reactive:plotObj>
   96: drawReactive
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   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 414
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

    guide_axis_logticks

using 'ggh4x' package ...
nrow dataFiltered(): 156
using 'ggh4x' package ...
p36912/Proteomics/EXPLORIS_2/analytic_20241120/20241120_C36912_029_autoQC03dia.raw
NA
p36912/Proteomics/EXPLORIS_2/analytic_20241120/20241120_C36912_029_autoQC03dia.raw
fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-27 11:42:57.770048 | timeMax: 2024-11-26 10:42:57.770635 | timeDiff: 5184000.00058722
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
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  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 156
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
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  112: <reactive:plotObj>
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   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 414
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
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  112: <reactive:plotObj>
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   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 414
using 'ggh4x' package ...
nrow dataFiltered(): 156
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-27 09:42:57.77005 | timeMax: 2024-11-26 09:42:57.77064 | timeDiff: 5184000.00058985
nFacets: 1
nrow dataFiltered(): 156
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 414
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-27 09:42:57.77 | timeMax: 2024-11-26 09:42:57.771 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 156
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 414
using 'ggh4x' package ...
p36946/Proteomics/EXPLORIS_2/analytic_20241120/20241120_C36946_007_autoQC03dda.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732609310327013000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-27 11:45:16.421984 | timeMax: 2024-11-26 10:45:16.422587 | timeDiff: 5184000.00060225
nFacets: 4
Warning: Error in if: argument is of length zero
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  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 156
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 414
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 414
using 'ggh4x' package ...
nrow dataFiltered(): 156
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-27 09:45:16.42198 | timeMax: 2024-11-26 09:45:16.42259 | timeDiff: 5184000.00061011
nFacets: 1
nrow dataFiltered(): 156
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 414
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-27 09:45:16.422 | timeMax: 2024-11-26 09:45:16.423 | timeDiff: 5184000.00100017
nFacets: 1
nrow dataFiltered(): 156
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 414
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732614173821292000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
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fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-27 11:55:06.307517 | timeMax: 2024-11-26 10:55:06.30864 | timeDiff: 5184000.00112319
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
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  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1328
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
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   83: renderFunc
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    1: runApp
nrow dataFiltered(): 1328
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-27 09:55:06.308 | timeMax: 2024-11-26 09:55:06.309 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1328
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732614312607470000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-27 11:55:46.971463 | timeMax: 2024-11-26 10:55:46.974025 | timeDiff: 5184000.00256181
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 169
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 414
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 414
using 'ggh4x' package ...
nrow dataFiltered(): 169
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-27 09:55:46.97146 | timeMax: 2024-11-26 09:55:46.97402 | timeDiff: 5184000.00256014
nFacets: 1
nrow dataFiltered(): 169
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 414
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-27 09:55:46.971 | timeMax: 2024-11-26 09:55:46.974 | timeDiff: 5184000.00300002
nFacets: 1
nrow dataFiltered(): 169
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 414
using 'ggh4x' package ...
p36946/Proteomics/EXPLORIS_2/analytic_20241120/20241126_C36946_007_autoQC03dda.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732614902199731000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
nrow dataFiltered(): 169
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 169
using 'ggh4x' package ...
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732614941801295000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted