Listening on http://127.0.0.1:43639

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

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Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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input timeRange: 7776000 | timeMin: 2024-09-28 14:47:25.889326 | timeMax: 2024-11-27 13:47:25.890022 | timeDiff: 5184000.00069594
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

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nFacets: 4
Warning: Error in if: argument is of length zero
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Reading /scratch/DIAQC/qc/dump/comet.RData ...
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
input timeRange: 7776000 | timeMin: 2024-09-28 12:47:25.88933 | timeMax: 2024-11-27 12:47:25.89002 | timeDiff: 5184000.00068998
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1360
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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nrow dataFiltered(): 1360
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

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using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-28 12:47:25.889 | timeMax: 2024-11-27 12:47:25.89 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1360
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 0
nFacets: 4
nrow dataFiltered(): 1488
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values or values outside the scale
range (`geom_point()`).
NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
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   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-29 10:52:05.318151 | timeMax: 2024-11-28 09:52:05.31879 | timeDiff: 5184000.00063896
nFacets: 4
Warning: Error in if: argument is of length zero
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  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 0
input timeRange: 7776000 | timeMin: 2024-09-29 08:52:05.318 | timeMax: 2024-11-28 08:52:05.319 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 0
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 52
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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  112: <reactive:plotObj>
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   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 684
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nrow dataFiltered(): 684
using 'ggh4x' package ...
nrow dataFiltered(): 52
using 'ggh4x' package ...
NA
plotClick: 
fn has changed to /srv/www/htdocs//p36889/Proteomics/TIMSTOF_1/analytic_20241126_/zip/20241126_009_autoQC03dia.d.zip
p36889/Proteomics/TIMSTOF_1/analytic_20241126_/zip/20241126_009_autoQC03dia.d.zip
NA
p36889/Proteomics/TIMSTOF_1/analytic_20241126_/zip/20241126_009_autoQC03dia.d.zip
NA
p36889/Proteomics/TIMSTOF_1/analytic_20241126_/zip/20241126_009_autoQC03dia.d.zip
NA
p36889/Proteomics/TIMSTOF_1/analytic_20241126_/zip/20241126_008_autoQC03dia.d.zip
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732711640959380000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
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  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-29 12:13:25.590404 | timeMax: 2024-11-28 11:13:25.59172 | timeDiff: 5184000.00131631
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
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  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
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  83: renderFunc
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   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
nFacets: 1
Warning: Error in if: argument is of length zero
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  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 4
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 416
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  168: renderPlot
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   83: renderFunc
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    1: runApp
nrow dataFiltered(): 0
input timeRange: 7776000 | timeMin: 2024-09-29 10:13:25.5904 | timeMax: 2024-11-28 10:13:25.59172 | timeDiff: 5184000.00131989
nFacets: 4
nrow dataFiltered(): 416
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nFacets: 1
nrow dataFiltered(): 0
input timeRange: 7776000 | timeMin: 2024-09-29 10:13:25.59 | timeMax: 2024-11-28 10:13:25.592 | timeDiff: 5184000.00200009
nFacets: 4
nrow dataFiltered(): 416
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nFacets: 1
nrow dataFiltered(): 0
nrow dataFiltered(): 0
nrow dataFiltered(): 416
using 'ggh4x' package ...
NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-29 12:14:00.186417 | timeMax: 2024-11-28 11:14:00.187637 | timeDiff: 5184000.00121999
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
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  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1200
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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  169: ggplot2FUN
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   82: output$__autoQC01__-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-09-29 10:14:00.186 | timeMax: 2024-11-28 10:14:00.188 | timeDiff: 5184000.00199986
nFacets: 4
nrow dataFiltered(): 1200
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
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  112: <reactive:plotObj>
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    1: runApp
nrow dataFiltered(): 1200
using 'ggh4x' package ...
Warning: Removed 8 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732788795818883000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
NA
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 416
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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  166: func
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  112: <reactive:plotObj>
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   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 216
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  170: .ggplot
  169: ggplot2FUN
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   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 216
using 'ggh4x' package ...
nrow dataFiltered(): 416
using 'ggh4x' package ...
p37064/Proteomics/FUSION_2/lorerossi_20241126/20241126_020_autoQC03dia.raw
NA
p37064/Proteomics/FUSION_2/lorerossi_20241126/20241126_020_autoQC03dia.raw
nFacets: 4
nrow dataFiltered(): 1066
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 342
using 'ggh4x' package ...
p37038/Proteomics/LUMOS_2/analytic_20241126/20241126_C37038_013_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p37038/Proteomics/LUMOS_2/analytic_20241126/20241126_C37038_013_autoQC03dia.raw
p3000/Proteomics/LUMOS_2/cfortes_20241125_autoQC/20241125_003_autoQC03dda.raw
NA
p3000/Proteomics/LUMOS_2/cfortes_20241125_autoQC/20241125_003_autoQC03dda.raw
nFacets: 4
nrow dataFiltered(): 416
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 216
using 'ggh4x' package ...
p37007/Proteomics/FUSION_2/damontruffer_20241123/20241123_005_autoQC03dda.raw
NA
p37007/Proteomics/FUSION_2/damontruffer_20241123/20241123_005_autoQC03dda.raw
p37064/Proteomics/FUSION_2/lorerossi_20241126/20241126_020_autoQC03dia.raw
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732788830210780000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-29 15:00:12.381462 | timeMax: 2024-11-28 14:00:12.382849 | timeDiff: 5184000.00138664
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1392
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
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  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-09-29 13:00:12.381 | timeMax: 2024-11-28 13:00:12.383 | timeDiff: 5184000.00199986
nFacets: 4
nrow dataFiltered(): 1392
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1392
using 'ggh4x' package ...
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 195
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 414
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 414
using 'ggh4x' package ...
nrow dataFiltered(): 195
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2024-09-29 13:00:12.381 | timeMax: 2024-11-28 14:00:45.858397 | timeDiff: 5184033.47739744
nFacets: 1
nrow dataFiltered(): 195
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 414
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2024-09-29 13:00:12.381 | timeMax: 2024-11-28 13:00:45.858 | timeDiff: 5184033.477
nFacets: 1
nrow dataFiltered(): 195
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 414
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2024-01-09 13:00:48.02 | timeMax: 2024-11-28 13:00:45.858 | timeDiff: 27993597.8380001
nFacets: 1
nrow dataFiltered(): 1443
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 2070
using 'ggh4x' package ...
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732798803234226000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-29 18:05:57.773944 | timeMax: 2024-11-28 17:05:57.775047 | timeDiff: 5184000.00110292
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 52
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 684
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 684
using 'ggh4x' package ...
nrow dataFiltered(): 52
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-29 16:05:57.77394 | timeMax: 2024-11-28 16:05:57.77505 | timeDiff: 5184000.00111032
nFacets: 1
nrow dataFiltered(): 52
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 684
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-29 16:05:57.774 | timeMax: 2024-11-28 16:05:57.775 | timeDiff: 5184000.00100017
nFacets: 1
nrow dataFiltered(): 52
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 684
using 'ggh4x' package ...
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-30 15:01:59.056667 | timeMax: 2024-11-29 14:01:59.057976 | timeDiff: 5184000.00130939
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 208
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 414
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-09-30 13:01:59.05667 | timeMax: 2024-11-29 13:01:59.05798 | timeDiff: 5184000.00131011
nFacets: 1
nrow dataFiltered(): 208
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nFacets: 1
nrow dataFiltered(): 414
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-09-30 13:01:59.057 | timeMax: 2024-11-29 13:01:59.058 | timeDiff: 5184000.00100017
nFacets: 1
nrow dataFiltered(): 208
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nFacets: 1
nrow dataFiltered(): 414
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 414
using 'ggh4x' package ...
nrow dataFiltered(): 208
using 'ggh4x' package ...
p3000/Proteomics/EXPLORIS_2/antdit_20241126/20241129_002_autoQC03dda.raw
NA
p3000/Proteomics/EXPLORIS_2/antdit_20241126/20241129_002_autoQC03dda.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732885311016772000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732783920906117000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-30 16:15:57.191282 | timeMax: 2024-11-29 15:15:57.192534 | timeDiff: 5184000.00125194
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-30 16:16:04.076931 | timeMax: 2024-11-29 15:16:04.078534 | timeDiff: 5184000.00160313
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
nFacets: 4
input timeRange: 7776000 | timeMin: 2024-09-30 14:15:57.191 | timeMax: 2024-11-29 14:15:57.193 | timeDiff: 5184000.00200009
nFacets: 4
input timeRange: 7776000 | timeMin: 2024-09-30 14:16:04.077 | timeMax: 2024-11-29 14:16:04.079 | timeDiff: 5184000.00200009
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1408
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1408
using 'ggh4x' package ...
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1408
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1408
using 'ggh4x' package ...
p36909/Proteomics/EXPLORIS_2/analytic_20241120/20241120_C36909_017_autoQC01.raw
p36909/Proteomics/EXPLORIS_2/analytic_20241120/20241120_C36909_017_autoQC01.raw
NA
vals$rawrr: TRUE
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/antdit_20241126/20241129_005_autoQC01.raw
p3000/Proteomics/EXPLORIS_2/antdit_20241126/20241129_005_autoQC01.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/antdit_20241126/20241129_005_autoQC01.raw
Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.
  194: FUN
  193: .isAssemblyWorking
  192: rawrr::readChromatogram
  191: <reactive>
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: peptideProfile
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-rawrr-autoQC03-plotChromatograms
    1: runApp
Read 22032 items
Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.
  174: <Anonymous>
  173: stop
  172: peptideProfile
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-rawrr-autoQC03-plotTools
    1: runApp
Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.
  171: <Anonymous>
  170: stop
  169: peptideProfile
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-rawrr-autoQC03-plotProfiles
    1: runApp
NA
p36946/Proteomics/EXPLORIS_2/analytic_20241126_phos/20241126_001_C36946_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p36946/Proteomics/EXPLORIS_2/analytic_20241126_phos/20241126_001_C36946_autoQC01.raw
Reading raw file: /srv/www/htdocs//p36946/Proteomics/EXPLORIS_2/analytic_20241126_phos/20241126_001_C36946_autoQC01.raw
Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.
  194: FUN
  193: .isAssemblyWorking
  192: rawrr::readChromatogram
  191: <reactive>
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: peptideProfile
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-rawrr-autoQC03-plotChromatograms
    1: runApp
Read 22032 items
Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.
  174: <Anonymous>
  173: stop
  172: peptideProfile
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-rawrr-autoQC03-plotTools
    1: runApp
Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.
  171: <Anonymous>
  170: stop
  169: peptideProfile
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-rawrr-autoQC03-plotProfiles
    1: runApp
nFacets: 4
nrow dataFiltered(): 1568
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values or values outside the scale
range (`geom_point()`).
p36602/Proteomics/EXPLORIS_1/wilkin_20241120_2024NOV20_LITHUANIA/20241120_001_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p36602/Proteomics/EXPLORIS_1/wilkin_20241120_2024NOV20_LITHUANIA/20241120_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p36602/Proteomics/EXPLORIS_1/wilkin_20241120_2024NOV20_LITHUANIA/20241120_001_autoQC01.raw
Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.
  194: FUN
  193: .isAssemblyWorking
  192: rawrr::readChromatogram
  191: <reactive>
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: peptideProfile
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-rawrr-autoQC03-plotChromatograms
    1: runApp
Read 22032 items
Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.
  174: <Anonymous>
  173: stop
  172: peptideProfile
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-rawrr-autoQC03-plotTools
    1: runApp
Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.
  171: <Anonymous>
  170: stop
  169: peptideProfile
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-rawrr-autoQC03-plotProfiles
    1: runApp
p36602/Proteomics/EXPLORIS_1/wilkin_20241120_2024NOV20_LITHUANIA/20241120_001_autoQC01.raw
vals$rawDiag: TRUE
plotChargeState
reading index for 20241120_001_autoQC01.raw...

Warning: Error in : BiocParallel errors
  1 remote errors, element index: 1
  0 unevaluated and other errors
  first remote error:
Error in .isAssemblyWorking(): 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.

  199: <Anonymous>
  198: stop
  197: .bpinit
  196: bplapply
  194: BiocParallel::bplapply
  191: <reactive>
  189: .func
  186: contextFunc
  185: env$runWith
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  177: self$.updateValue
  175: data
  168: renderPlot
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  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-rawDiag-autoQC03-plot
    1: runApp
vals$rawrr: FALSE
vals$rawrr: TRUE
vals$rawDiag: FALSE
p36889/Proteomics/EXPLORIS_1/analytic_20241122/20241122_C36889_032_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p36889/Proteomics/EXPLORIS_1/analytic_20241122/20241122_C36889_032_autoQC01.raw
Reading raw file: /srv/www/htdocs//p36889/Proteomics/EXPLORIS_1/analytic_20241122/20241122_C36889_032_autoQC01.raw
Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.
  194: FUN
  193: .isAssemblyWorking
  192: rawrr::readChromatogram
  191: <reactive>
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: peptideProfile
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-rawrr-autoQC03-plotChromatograms
    1: runApp
Read 22032 items
Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.
  174: <Anonymous>
  173: stop
  172: peptideProfile
  168: renderPlot
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  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-rawrr-autoQC03-plotTools
    1: runApp
Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.
  171: <Anonymous>
  170: stop
  169: peptideProfile
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-rawrr-autoQC03-plotProfiles
    1: runApp
NA
nFacets: 4
nrow dataFiltered(): 0
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732889750025170000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732889757376003000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-09-30 17:52:21.43291 | timeMax: 2024-11-29 16:52:21.434536 | timeDiff: 5184000.0016253
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1184
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-09-30 15:52:21.433 | timeMax: 2024-11-29 15:52:21.435 | timeDiff: 5184000.00199986
nFacets: 4
nrow dataFiltered(): 1184
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1184
using 'ggh4x' package ...
Warning: Removed 8 rows containing missing values or values outside the scale
range (`geom_point()`).
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 416
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 198
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 198
using 'ggh4x' package ...
nrow dataFiltered(): 416
using 'ggh4x' package ...
p37064/Proteomics/FUSION_2/lorerossi_20241126/20241126_020_autoQC03dia.raw
NA
p37007/Proteomics/FUSION_2/damontruffer_20241123/20241123_005_autoQC03dda.raw
p37007/Proteomics/FUSION_2/damontruffer_20241123/20241123_005_autoQC03dda.raw
nFacets: 1
nrow dataFiltered(): 208
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 324
using 'ggh4x' package ...
NA
nFacets: 4
nrow dataFiltered(): 1584
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732895534618954000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-01 00:21:51.799588 | timeMax: 2024-11-29 23:21:51.801071 | timeDiff: 5184000.0014832
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 65
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 738
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-09-30 22:21:51.79959 | timeMax: 2024-11-29 22:21:51.80107 | timeDiff: 5184000.00147986
nFacets: 1
nrow dataFiltered(): 65
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nFacets: 1
nrow dataFiltered(): 738
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-09-30 22:21:51.8 | timeMax: 2024-11-29 22:21:51.801 | timeDiff: 5184000.00100017
nFacets: 1
nrow dataFiltered(): 65
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nFacets: 1
nrow dataFiltered(): 738
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 738
using 'ggh4x' package ...
nrow dataFiltered(): 65
using 'ggh4x' package ...
p37027/Proteomics/TIMSTOF_1/analytic_20241128_/zip/20241128_006_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p37027/Proteomics/TIMSTOF_1/analytic_20241128_/zip/20241128_006_autoQC03dia.d.zip
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732809948982478000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
p37027/Proteomics/TIMSTOF_1/analytic_20241128_/zip/20241128_008_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p37027/Proteomics/TIMSTOF_1/analytic_20241128_/zip/20241128_008_autoQC03dia.d.zip
p36889/Proteomics/TIMSTOF_1/analytic_20241126_/zip/20241126_008_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p36889/Proteomics/TIMSTOF_1/analytic_20241126_/zip/20241126_008_autoQC03dia.d.zip
input timeRange: 7776000 | timeMin: 2024-09-02 22:21:53.852 | timeMax: 2024-11-29 22:21:51.801 | timeDiff: 7603197.94900012
nFacets: 1
nrow dataFiltered(): 65
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 954
using 'ggh4x' package ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-03 20:56:39.290302 | timeMax: 2024-12-02 19:56:39.291724 | timeDiff: 5184000.00142193
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1184
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-10-03 18:56:39.29 | timeMax: 2024-12-02 18:56:39.292 | timeDiff: 5184000.00200009
nFacets: 4
nrow dataFiltered(): 1184
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1184
using 'ggh4x' package ...
Warning: Removed 8 rows containing missing values or values outside the scale
range (`geom_point()`).
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 468
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 198
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 468
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 198
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 198
using 'ggh4x' package ...
nrow dataFiltered(): 468
using 'ggh4x' package ...
p37145/Proteomics/FUSION_2/lorerossi_20241202/20241202_020_autoQC03dia.raw
NA
p37145/Proteomics/FUSION_2/lorerossi_20241202/20241202_020_autoQC03dia.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733165791908201000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Warning: Error in if: missing value where TRUE/FALSE needed
  1: runApp
input timeRange: 1209600 | timeMin: 2024-11-26 08:48:46.845013 | timeMax: 2024-12-03 08:48:46.845068 | timeDiff: 604800.000054836
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733212126830071000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-04 09:51:21.293824 | timeMax: 2024-12-03 08:51:21.295111 | timeDiff: 5184000.00128675
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1200
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-10-04 07:51:21.294 | timeMax: 2024-12-03 07:51:21.295 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1200
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1200
using 'ggh4x' package ...
Warning: Removed 8 rows containing missing values or values outside the scale
range (`geom_point()`).
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-04 10:22:11.224953 | timeMax: 2024-12-03 09:22:11.226077 | timeDiff: 5184000.00112414
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1200
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-10-04 08:22:11.225 | timeMax: 2024-12-03 08:22:11.226 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1200
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1200
using 'ggh4x' package ...
Warning: Removed 8 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733214125907983000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-04 17:51:28.890986 | timeMax: 2024-12-03 16:51:28.891569 | timeDiff: 5184000.00058341
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 221
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 378
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 378
using 'ggh4x' package ...
nrow dataFiltered(): 221
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-04 15:51:28.89099 | timeMax: 2024-12-03 15:51:28.89157 | timeDiff: 5184000.00058007
nFacets: 1
nrow dataFiltered(): 221
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 378
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-04 15:51:28.891 | timeMax: 2024-12-03 15:51:28.892 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 221
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 378
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 208
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 378
using 'ggh4x' package ...
p3000/Proteomics/EXPLORIS_1/antdit_20241125/20241120_003_autoQC03dda.raw
NA
p3000/Proteomics/EXPLORIS_1/antdit_20241125/20241120_003_autoQC03dda.raw
NA
p36889/Proteomics/EXPLORIS_1/analytic_20241122/20241122_C36889_033_autoQC03dda.raw
NA
p3000/Proteomics/EXPLORIS_1/antdit_20241125/20241120_003_autoQC03dda.raw
p36602/Proteomics/EXPLORIS_1/wilkin_20241120_2024NOV20_LITHUANIA/20241120_020_autoQC03dda.raw
NA
p36602/Proteomics/EXPLORIS_1/wilkin_20241115_2024NOV15_LITHUANIA/20241115_020_autoQC03dda.raw
NA
p3000/Proteomics/EXPLORIS_1/antdit_20241125/20241120_003_autoQC03dda.raw
NA
p36791/Proteomics/EXPLORIS_1/analytic_20241121/20241121_C36791_031_autoQC03dia.raw
p37036/Proteomics/EXPLORIS_1/sschuerch_20241129/20241129_023_autoQC03dia.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733241084520609000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733212274608509000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-05 09:55:34.943446 | timeMax: 2024-12-04 08:55:34.944019 | timeDiff: 5184000.00057316
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 52
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 738
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 738
using 'ggh4x' package ...
nrow dataFiltered(): 52
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-05 07:55:34.94345 | timeMax: 2024-12-04 07:55:34.94402 | timeDiff: 5184000.00057006
nFacets: 1
nrow dataFiltered(): 52
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 738
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-05 07:55:34.943 | timeMax: 2024-12-04 07:55:34.944 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 52
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 738
using 'ggh4x' package ...
NA
p37027/Proteomics/TIMSTOF_1/analytic_20241128_/zip/20241128_006_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p37027/Proteomics/TIMSTOF_1/analytic_20241128_/zip/20241128_006_autoQC03dia.d.zip
p36958/Proteomics/TIMSTOF_1/analytic_20241129/zip/20241129_001_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p36958/Proteomics/TIMSTOF_1/analytic_20241129/zip/20241129_001_autoQC03dia.d.zip
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732918905163084000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
plotClick: 
fn has changed to /srv/www/htdocs//p37027/Proteomics/TIMSTOF_1/analytic_20241128_/zip/20241128_006_autoQC03dia.d.zip
p37027/Proteomics/TIMSTOF_1/analytic_20241128_/zip/20241128_006_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p36958/Proteomics/TIMSTOF_1/analytic_20241129/zip/20241129_001_autoQC03dia.d.zip
p36958/Proteomics/TIMSTOF_1/analytic_20241129/zip/20241129_001_autoQC03dia.d.zip
NA
plotClick: 
fn has changed to /srv/www/htdocs//p37027/Proteomics/TIMSTOF_1/analytic_20241128_/zip/20241128_006_autoQC03dia.d.zip
p37027/Proteomics/TIMSTOF_1/analytic_20241128_/zip/20241128_006_autoQC03dia.d.zip
NA
p36958/Proteomics/TIMSTOF_1/analytic_20241129/zip/20241129_110_autoQC03dia.d.zip
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Warning: Error in if: missing value where TRUE/FALSE needed
  1: runApp
input timeRange: 1209600 | timeMin: 2024-11-27 09:00:33.402047 | timeMax: 2024-12-04 09:00:33.402177 | timeDiff: 604800.000129461
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733299233392389000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-05 15:16:32.576837 | timeMax: 2024-12-04 14:16:32.577921 | timeDiff: 5184000.00108433
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1408
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-10-05 13:16:32.577 | timeMax: 2024-12-04 13:16:32.578 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1408
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1408
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733318185065231000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-06 14:43:43.352981 | timeMax: 2024-12-05 13:43:43.354223 | timeDiff: 5184000.00124192
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-06 14:43:50.506957 | timeMax: 2024-12-05 13:43:50.508125 | timeDiff: 5184000.00116754
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-06 12:43:43.353 | timeMax: 2024-12-05 12:43:43.354 | timeDiff: 5184000.00100017
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
nrow dataFiltered(): 0
input timeRange: 7776000 | timeMin: 2024-10-06 12:43:50.50696 | timeMax: 2024-12-05 12:43:50.50812 | timeDiff: 5184000.00116014
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 26
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 756
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-10-06 12:43:50.507 | timeMax: 2024-12-05 12:43:50.508 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 26
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nFacets: 1
nrow dataFiltered(): 756
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 756
using 'ggh4x' package ...
nrow dataFiltered(): 26
using 'ggh4x' package ...
NA
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 26
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 756
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 756
using 'ggh4x' package ...
nrow dataFiltered(): 26
using 'ggh4x' package ...
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733298931411782000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
NA
plotClick: 
fn has changed to /srv/www/htdocs//p36958/Proteomics/TIMSTOF_1/analytic_20241129/zip/20241129_137_autoQC03dia.d.zip
p36958/Proteomics/TIMSTOF_1/analytic_20241129/zip/20241129_137_autoQC03dia.d.zip
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-06 17:01:53.097199 | timeMax: 2024-12-05 16:01:53.098182 | timeDiff: 5184000.00098324
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1264
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-10-06 15:01:53.097 | timeMax: 2024-12-05 15:01:53.098 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1264
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1264
using 'ggh4x' package ...
Warning: Removed 19 rows containing missing values or values outside the scale
range (`geom_point()`).
NA
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 468
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 216
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 216
using 'ggh4x' package ...
nrow dataFiltered(): 468
using 'ggh4x' package ...
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733410907072708000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-06 21:29:33.524883 | timeMax: 2024-12-05 20:29:33.525477 | timeDiff: 5184000.00059366
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 0
input timeRange: 7776000 | timeMin: 2024-10-06 19:29:33.525 | timeMax: 2024-12-05 19:29:33.525 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 0
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 13
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 774
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 774
using 'ggh4x' package ...
nrow dataFiltered(): 13
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733402614892881000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-06 23:43:21.735956 | timeMax: 2024-12-05 22:43:21.737156 | timeDiff: 5184000.00120068
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
input timeRange: 7776000 | timeMin: 2024-10-06 21:43:21.736 | timeMax: 2024-12-05 21:43:21.737 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 0
nrow dataFiltered(): 0
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733426969533868000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 774
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 774
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733402623857096000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-07 15:31:30.130821 | timeMax: 2024-12-06 14:31:30.131933 | timeDiff: 5184000.00111151
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 26
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 774
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 774
using 'ggh4x' package ...
nrow dataFiltered(): 26
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-07 13:31:30.13082 | timeMax: 2024-12-06 13:31:30.13193 | timeDiff: 5184000.00110984
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 774
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-07 13:31:30.131 | timeMax: 2024-12-06 13:31:30.132 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 774
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733434994842247000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
plotClick: 
fn has changed to /srv/www/htdocs//NA
NA
input timeRange: 7776000 | timeMin: 2024-09-22 13:31:32.79 | timeMax: 2024-12-06 13:31:30.132 | timeDiff: 6479997.34200001
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 936
using 'ggh4x' package ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-07 15:44:02.952271 | timeMax: 2024-12-06 14:44:02.952848 | timeDiff: 5184000.00057793
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1456
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1456
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-07 13:44:02.952 | timeMax: 2024-12-06 13:44:02.953 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1456
using 'ggh4x' package ...
Reading /scratch/DIAQC/qc/dump/comet.RData ...
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733492639265180000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-10 09:59:28.525862 | timeMax: 2024-12-09 08:59:28.526929 | timeDiff: 5184000.0010674
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 221
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 342
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 342
using 'ggh4x' package ...
nrow dataFiltered(): 221
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-10 07:59:28.52586 | timeMax: 2024-12-09 07:59:28.52693 | timeDiff: 5184000.00106978
nFacets: 1
nrow dataFiltered(): 221
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 342
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-10 07:59:28.526 | timeMax: 2024-12-09 07:59:28.527 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 221
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 342
using 'ggh4x' package ...
p36912/Proteomics/EXPLORIS_2/analytic_20241120/20241120_C36912_029_autoQC03dia.raw
NA
NA
p37105/Proteomics/EXPLORIS_2/analytic_20241205/20241205_C37105_010_autoQC03dda.raw
nrow dataFiltered(): 221
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 221
using 'ggh4x' package ...
p37105/Proteomics/EXPLORIS_2/analytic_20241205/20241205_C37105_010_autoQC03dda.raw
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-10 10:42:28.12622 | timeMax: 2024-12-09 09:42:28.126803 | timeDiff: 5184000.00058365
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1216
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1216
using 'ggh4x' package ...
Warning: Removed 17 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-10-10 08:42:28.126 | timeMax: 2024-12-09 08:42:28.127 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1216
using 'ggh4x' package ...
Warning: Removed 17 rows containing missing values or values outside the scale
range (`geom_point()`).
NA
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 520
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 198
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 198
using 'ggh4x' package ...
nrow dataFiltered(): 520
using 'ggh4x' package ...
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733733744624722000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733731161896761000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp