Listening on http://127.0.0.1:35935 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-11 12:22:41.018162 | timeMax: 2024-12-10 11:22:41.018762 | timeDiff: 5184000.00059938 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 221 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 324 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 324 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-10-11 10:22:41.01816 | timeMax: 2024-12-10 10:22:41.01876 | timeDiff: 5184000.0006001 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 324 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-10-11 10:22:41.018 | timeMax: 2024-12-10 10:22:41.019 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 324 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-09-11 10:22:43.17572 | timeMax: 2024-12-10 10:22:41.019 | timeDiff: 7775997.84328008 nFacets: 0 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-11 13:23:04.620325 | timeMax: 2024-12-10 10:22:41.019 | timeDiff: 7772376.39867496 nFacets: 0 nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-11 11:23:04.62 | timeMax: 2024-12-10 10:22:41.019 | timeDiff: 7772376.39900017 input timeRange: 15552000 | timeMin: 2024-09-11 11:23:04.62 | timeMax: 2024-12-10 11:23:20.973274 | timeDiff: 7772416.35327363 nFacets: 0 nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-09-11 11:23:04.62 | timeMax: 2024-12-10 10:23:20.973 | timeDiff: 7772416.35300016 nFacets: 0 nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-06-14 10:23:21.82 | timeMax: 2024-12-10 10:23:20.973 | timeDiff: 15465599.1530001 nFacets: 0 nFacets: 1 nrow dataFiltered(): 918 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-06-13 10:23:24.56857 | timeMax: 2024-12-10 10:23:20.973 | timeDiff: 15551996.4044299 nFacets: 0 nFacets: 1 nrow dataFiltered(): 918 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-06-13 13:23:30.020969 | timeMax: 2024-12-10 10:23:20.973 | timeDiff: 15548390.9520309 nFacets: 0 nFacets: 1 nrow dataFiltered(): 918 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-06-13 11:23:30.021 | timeMax: 2024-12-10 10:23:20.973 | timeDiff: 15548390.9520001 input timeRange: 31536000 | timeMin: 2024-06-13 11:23:30.021 | timeMax: 2024-12-10 11:23:32.069099 | timeDiff: 15548402.048099 nFacets: 0 nFacets: 1 nrow dataFiltered(): 918 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-06-13 11:23:30.021 | timeMax: 2024-12-10 10:23:32.069 | timeDiff: 15548402.0480001 nFacets: 0 nFacets: 1 nrow dataFiltered(): 918 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-12-11 10:23:32.9372 | timeMax: 2024-12-10 10:23:32.069 | timeDiff: 31535999.1317999 nFacets: 1 nFacets: 1 nrow dataFiltered(): 1224 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-12-11 12:23:35.091782 | timeMax: 2024-12-10 10:23:32.069 | timeDiff: 31532396.9772179 nrow dataFiltered(): 78 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 78 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1224 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-12-11 11:23:35.092 | timeMax: 2024-12-10 10:23:32.069 | timeDiff: 31532396.977 nrow dataFiltered(): 78 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 78 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733826156713964000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Execution halted Warning messages: 1: agg could not write to the given file 2: agg could not write to the given file