Listening on http://127.0.0.1:39399

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

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Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-11 15:25:42.205577 | timeMax: 2024-12-10 14:25:42.206764 | timeDiff: 5184000.0011878
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

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nFacets: 4
Warning: Error in if: argument is of length zero
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Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
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   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
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  96: func
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  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 221
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nrow dataFiltered(): 324
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
input timeRange: 7776000 | timeMin: 2024-10-11 13:25:42.20558 | timeMax: 2024-12-10 13:25:42.20676 | timeDiff: 5184000.00117993
nFacets: 1
nrow dataFiltered(): 221
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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nFacets: 1
nrow dataFiltered(): 324
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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input timeRange: 7776000 | timeMin: 2024-10-11 13:25:42.206 | timeMax: 2024-12-10 13:25:42.207 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 221
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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nFacets: 1
nrow dataFiltered(): 324
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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nrow dataFiltered(): 324
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

    guide_axis_logticks

using 'ggh4x' package ...
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using 'ggh4x' package ...
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p37105/Proteomics/EXPLORIS_2/analytic_20241205/20241205_C37105_010_autoQC03dda.raw
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p36912/Proteomics/EXPLORIS_2/analytic_20241120/20241120_C36912_029_autoQC03dia.raw
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using 'ggh4x' package ...
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using 'ggh4x' package ...
p37142/Proteomics/EXPLORIS_1/analytic_20241209/20241209_C37142_008_autoQC03dda.raw
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using 'ggh4x' package ...
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using 'ggh4x' package ...
NA
p36912/Proteomics/EXPLORIS_2/analytic_20241120/20241120_C36912_029_autoQC03dia.raw
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-11 15:40:29.083229 | timeMax: 2024-12-10 14:40:29.084696 | timeDiff: 5184000.00146747
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1392
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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input timeRange: 7776000 | timeMin: 2024-10-11 13:40:29.083 | timeMax: 2024-12-10 13:40:29.085 | timeDiff: 5184000.00200009
nFacets: 4
nrow dataFiltered(): 1392
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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nrow dataFiltered(): 1392
using 'ggh4x' package ...
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733837131107321000.json': Permission denied
Warning: Error in file: cannot open the connection
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   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 221
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nrow dataFiltered(): 342
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nrow dataFiltered(): 342
using 'ggh4x' package ...
nrow dataFiltered(): 221
using 'ggh4x' package ...
p37101/Proteomics/EXPLORIS_2/analytic_20241209/20241209_C37101_017_autoQC03dia.raw
nrow dataFiltered(): 342
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nrow dataFiltered(): 342
using 'ggh4x' package ...
NA
p37101/Proteomics/EXPLORIS_2/analytic_20241209/20241209_C37101_017_autoQC03dia.raw
NA
input timeRange: 7776000 | timeMin: 2024-09-11 13:40:35.54314 | timeMax: 2024-12-10 13:40:29.085 | timeDiff: 7775993.5418601
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nrow dataFiltered(): 286
using 'ggh4x' package ...
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nrow dataFiltered(): 522
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-11 16:41:08.651797 | timeMax: 2024-12-10 13:40:29.085 | timeDiff: 7772360.43320322
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using 'ggh4x' package ...
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using 'ggh4x' package ...
nrow dataFiltered(): 522
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-09-11 14:41:08.652 | timeMax: 2024-12-10 13:40:29.085 | timeDiff: 7772360.43300009
nFacets: 1
nrow dataFiltered(): 286
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 522
using 'ggh4x' package ...
nrow dataFiltered(): 522
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nrow dataFiltered(): 522
using 'ggh4x' package ...
NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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  83: renderFunc
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   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-12 10:19:16.946628 | timeMax: 2024-12-11 09:19:16.947536 | timeDiff: 5184000.0009079
nFacets: 4
Warning: Error in if: argument is of length zero
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  83: renderFunc
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   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
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  83: renderFunc
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   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
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vals$rawrr: FALSE
vals$rawDiag: FALSE
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Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  169: ggplot2FUN
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  112: <reactive:plotObj>
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   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 342
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  169: ggplot2FUN
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  166: func
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    1: runApp
nrow dataFiltered(): 342
using 'ggh4x' package ...
nrow dataFiltered(): 221
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-12 08:19:16.94663 | timeMax: 2024-12-11 08:19:16.94754 | timeDiff: 5184000.00091004
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using 'ggh4x' package ...
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using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-12 08:19:16.947 | timeMax: 2024-12-11 08:19:16.948 | timeDiff: 5184000.00099993
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using 'ggh4x' package ...
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using 'ggh4x' package ...
p37105/Proteomics/EXPLORIS_2/analytic_20241205/20241205_C37105_010_autoQC03dda.raw
NA
p37101/Proteomics/EXPLORIS_2/analytic_20241209/20241209_C37101_017_autoQC03dia.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733838019741377000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733905152749987000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted