Listening on http://127.0.0.1:35245

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-13 17:01:22.028566 | timeMax: 2024-12-12 16:01:22.029472 | timeDiff: 5184000.00090575
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 221
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 342
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 342
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

    guide_axis_logticks

using 'ggh4x' package ...
nrow dataFiltered(): 221
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-13 15:01:22.02857 | timeMax: 2024-12-12 15:01:22.02947 | timeDiff: 5184000.00089979
nFacets: 1
nrow dataFiltered(): 221
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 342
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-13 15:01:22.029 | timeMax: 2024-12-12 15:01:22.029 | timeDiff: 5184000
nFacets: 1
nrow dataFiltered(): 221
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 342
using 'ggh4x' package ...
NA
p37105/Proteomics/EXPLORIS_2/analytic_20241205/20241205_C37105_010_autoQC03dda.raw
NA
NA
p37209/Proteomics/EXPLORIS_2/analytic_20241210/20241210_C37209_029_autoQC03dia.raw
nrow dataFiltered(): 342
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 342
using 'ggh4x' package ...
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734015676460362000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-13 17:10:49.099818 | timeMax: 2024-12-12 16:10:49.100552 | timeDiff: 5184000.00073457
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 221
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 342
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 342
using 'ggh4x' package ...
nrow dataFiltered(): 221
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-13 15:10:49.09982 | timeMax: 2024-12-12 15:10:49.10055 | timeDiff: 5184000.0007298
nFacets: 1
nrow dataFiltered(): 221
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 342
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-13 15:10:49.1 | timeMax: 2024-12-12 15:10:49.101 | timeDiff: 5184000.00100017
nFacets: 1
nrow dataFiltered(): 221
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 342
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 162
using 'ggh4x' package ...
NA
input timeRange: 31536000 | timeMin: 2024-10-13 15:10:49.1 | timeMax: 2024-12-12 16:11:00.532595 | timeDiff: 5184011.43259478
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 162
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2024-10-13 15:10:49.1 | timeMax: 2024-12-12 15:11:00.533 | timeDiff: 5184011.43300009
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 162
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2024-02-22 15:11:02.036 | timeMax: 2024-12-12 15:11:00.533 | timeDiff: 25401598.497
nFacets: 1
nrow dataFiltered(): 52
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 1188
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2023-12-13 15:11:05.3404 | timeMax: 2024-12-12 15:11:00.533 | timeDiff: 31535995.1926
nFacets: 1
nrow dataFiltered(): 104
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 1278
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2023-12-13 17:11:09.628234 | timeMax: 2024-12-12 15:11:00.533 | timeDiff: 31532390.9047661
nFacets: 1
nrow dataFiltered(): 104
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 1278
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2023-12-13 16:11:09.628 | timeMax: 2024-12-12 15:11:00.533 | timeDiff: 31532390.905
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 828
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2024-07-18 15:11:11.779 | timeMax: 2024-12-12 15:11:00.533 | timeDiff: 12700788.7539999
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 828
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2024-07-18 15:11:20.608 | timeMax: 2024-12-12 15:11:00.533 | timeDiff: 12700779.925
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 828
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2024-08-28 15:11:25.4 | timeMax: 2024-12-12 15:11:00.533 | timeDiff: 9158375.1329999
nFacets: 1
nrow dataFiltered(): 325
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 594
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2024-09-30 15:11:29.463 | timeMax: 2024-12-12 15:11:00.533 | timeDiff: 6307171.06999993
nFacets: 1
nrow dataFiltered(): 234
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 432
using 'ggh4x' package ...
p37105/Proteomics/EXPLORIS_2/analytic_20241205/20241205_C37105_010_autoQC03dda.raw
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 486
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734016242621569000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-13 17:16:51.003275 | timeMax: 2024-12-12 16:16:51.004476 | timeDiff: 5184000.00120115
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 221
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 342
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 342
using 'ggh4x' package ...
nrow dataFiltered(): 221
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-13 15:16:51.00327 | timeMax: 2024-12-12 15:16:51.00448 | timeDiff: 5184000.00120997
nFacets: 1
nrow dataFiltered(): 221
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 342
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-13 15:16:51.003 | timeMax: 2024-12-12 15:16:51.004 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 221
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 342
using 'ggh4x' package ...
NA
p37105/Proteomics/EXPLORIS_2/analytic_20241205/20241205_C37105_010_autoQC03dda.raw
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-13 17:17:59.748206 | timeMax: 2024-12-12 16:17:59.749065 | timeDiff: 5184000.00085902
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1408
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-10-13 15:17:59.748 | timeMax: 2024-12-12 15:17:59.749 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1408
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1408
using 'ggh4x' package ...
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 221
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 342
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 342
using 'ggh4x' package ...
nrow dataFiltered(): 221
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734016603968766000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-13 17:19:09.105457 | timeMax: 2024-12-12 16:19:09.106888 | timeDiff: 5184000.00143075
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1408
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-10-13 15:19:09.105 | timeMax: 2024-12-12 15:19:09.107 | timeDiff: 5184000.00200009
nFacets: 4
nrow dataFiltered(): 1408
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1408
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734016673710336000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 221
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 342
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 342
using 'ggh4x' package ...
nrow dataFiltered(): 221
using 'ggh4x' package ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-13 17:20:28.814399 | timeMax: 2024-12-12 16:20:28.815863 | timeDiff: 5184000.00146413
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 221
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 342
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-10-13 15:20:28.8144 | timeMax: 2024-12-12 15:20:28.81586 | timeDiff: 5184000.00146008
nFacets: 1
nrow dataFiltered(): 221
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nFacets: 1
nrow dataFiltered(): 342
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-10-13 15:20:28.814 | timeMax: 2024-12-12 15:20:28.816 | timeDiff: 5184000.00200009
nFacets: 1
nrow dataFiltered(): 221
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nFacets: 1
nrow dataFiltered(): 342
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 342
using 'ggh4x' package ...
nrow dataFiltered(): 221
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734016740183340000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 162
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2024-10-13 15:20:28.814 | timeMax: 2024-12-12 16:20:43.239866 | timeDiff: 5184014.42586613
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 162
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2024-10-13 15:20:28.814 | timeMax: 2024-12-12 15:20:43.24 | timeDiff: 5184014.42600012
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 162
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2023-12-13 15:20:45.40077 | timeMax: 2024-12-12 15:20:43.24 | timeDiff: 31535997.8392301
nFacets: 1
nrow dataFiltered(): 104
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 1278
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2023-12-13 17:20:48.270813 | timeMax: 2024-12-12 15:20:43.24 | timeDiff: 31532394.9691873
NA
nFacets: 1
nrow dataFiltered(): 104
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 1278
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2023-12-13 16:20:48.271 | timeMax: 2024-12-12 15:20:43.24 | timeDiff: 31532394.9690001
NA
nFacets: 1
nrow dataFiltered(): 1755
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 1278
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2024-09-14 15:20:52.146 | timeMax: 2024-12-12 15:20:43.24 | timeDiff: 7689591.0940001
nFacets: 1
nrow dataFiltered(): 312
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 504
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 286
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 522
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734016819218512000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-13 17:28:04.543165 | timeMax: 2024-12-12 16:28:04.544 | timeDiff: 5184000.0008347
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 221
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 342
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 342
using 'ggh4x' package ...
nrow dataFiltered(): 221
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-13 15:28:04.54317 | timeMax: 2024-12-12 15:28:04.544 | timeDiff: 5184000.00082994
nFacets: 1
nrow dataFiltered(): 221
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 342
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-13 15:28:04.543 | timeMax: 2024-12-12 15:28:04.544 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 221
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 342
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734017277955841000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted