Listening on http://127.0.0.1:45125

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

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Loading required package: readr
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Loading required package: ggnewscale
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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input timeRange: 7776000 | timeMin: 2024-11-09 07:50:05.416298 | timeMax: 2025-01-08 07:50:05.416894 | timeDiff: 5184000.00059581
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

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nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
input timeRange: 7776000 | timeMin: 2024-11-09 06:50:05.4163 | timeMax: 2025-01-08 06:50:05.41689 | timeDiff: 5184000.00058985
fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
input timeRange: 7776000 | timeMin: 2024-11-09 08:55:58.878124 | timeMax: 2025-01-08 08:55:58.878715 | timeDiff: 5184000.00059128
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
nFacets: 4
vals$rawrr: FALSE
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input timeRange: 7776000 | timeMin: 2024-11-09 07:55:58.878 | timeMax: 2025-01-08 07:55:58.879 | timeDiff: 5184000.00099993
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nrow dataFiltered(): 0
nrow dataFiltered(): 0
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
Warning: Error in graphics::plot.new: figure margins too large
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    1: runApp
nrow dataFiltered(): 630
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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nrow dataFiltered(): 630
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

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using 'ggh4x' package ...
NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
input timeRange: 7776000 | timeMin: 2024-11-09 09:09:37.756086 | timeMax: 2025-01-08 09:09:37.756692 | timeDiff: 5184000.00060606
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
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  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
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  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 4
nFacets: 1
vals$rawrr: FALSE
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vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 468
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nrow dataFiltered(): 162
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nrow dataFiltered(): 162
using 'ggh4x' package ...
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using 'ggh4x' package ...
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using 'ggh4x' package ...
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nrow dataFiltered(): 162
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-11-09 08:09:37.756 | timeMax: 2025-01-08 08:09:37.757 | timeDiff: 5184000.00099993
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nrow dataFiltered(): 468
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 162
using 'ggh4x' package ...
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nrow dataFiltered(): 1024
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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  169: ggplot2FUN
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    1: runApp
nrow dataFiltered(): 1024
using 'ggh4x' package ...
Warning: Removed 15 rows containing missing values or values outside the scale
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NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1736319001070950000.json': Permission denied
Warning: Error in file: cannot open the connection
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  29: callback
   1: runApp
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
input timeRange: 7776000 | timeMin: 2024-11-09 10:25:33.956326 | timeMax: 2025-01-08 10:25:33.956917 | timeDiff: 5184000.00059128
nFacets: 4
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nFacets: 4
vals$rawrr: FALSE
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nrow dataFiltered(): 1072
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nrow dataFiltered(): 1072
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-11-09 09:25:33.956 | timeMax: 2025-01-08 09:25:33.957 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1072
using 'ggh4x' package ...
Warning in file(con, "w") :
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Warning: Error in file: cannot open the connection
  34: file
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   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1736323774125201000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
p36716/Proteomics/TIMSTOF_1/muegeli_20241218_/zip/20241218_012_autoQC03dia.d.zip
NA
input timeRange: 7776000 | timeMin: 2024-10-10 07:56:00.36412 | timeMax: 2025-01-08 07:55:58.879 | timeDiff: 7775998.51487994
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using 'ggh4x' package ...
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using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-10 10:56:53.602 | timeMax: 2025-01-08 07:55:58.879 | timeDiff: 7765145.27699995
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using 'ggh4x' package ...
p36889/Proteomics/TIMSTOF_1/analytic_20241126_/zip/20241126_009_autoQC03dia.d.zip
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p36958/Proteomics/TIMSTOF_1/analytic_20241129/zip/20241129_083_autoQC03dia.d.zip
NA
p36958/Proteomics/TIMSTOF_1/analytic_20241129/zip/20241129_056_autoQC03dia.d.zip
NA
p36958/Proteomics/TIMSTOF_1/analytic_20241129/zip/20241129_029_autoQC03dia.d.zip
p36958/Proteomics/TIMSTOF_1/analytic_20241129/zip/20241129_056_autoQC03dia.d.zip
NA
p36958/Proteomics/TIMSTOF_1/analytic_20241129/zip/20241129_137_autoQC03dia.d.zip
p36958/Proteomics/TIMSTOF_1/analytic_20241129/zip/20241129_158_autoQC03dia.d.zip
NA
p36958/Proteomics/TIMSTOF_1/analytic_20241129/zip/20241129_158_autoQC03dia.d.zip
NA
p36958/Proteomics/TIMSTOF_1/analytic_20241129/zip/20241129_137_autoQC03dia.d.zip
NA
p37191/Proteomics/TIMSTOF_1/spfammatter_20241206/zip/20241206_017_autoQC03dia.d.zip
NA
p37165/Proteomics/TIMSTOF_1/wanghao_20241206_/zip/20241206_008_autoQC03dia.d.zip
p36422/Proteomics/TIMSTOF_1/deanben_20241206_/zip/20241206_004_autoQC03dia.d.zip
p37165/Proteomics/TIMSTOF_1/wanghao_20241206_/zip/20241206_008_autoQC03dia.d.zip
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p37165/Proteomics/TIMSTOF_1/wanghao_20241206_/zip/20241209_001_autoQC03dia.d.zip
NA
nrow dataFiltered(): 1026
using 'ggh4x' package ...
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
input timeRange: 7776000 | timeMin: 2024-11-09 11:54:33.755831 | timeMax: 2025-01-08 11:54:33.756423 | timeDiff: 5184000.00059223
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
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  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
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nFacets: 1
vals$rawrr: FALSE
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nrow dataFiltered(): 468
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nrow dataFiltered(): 162
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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    1: runApp
nrow dataFiltered(): 162
using 'ggh4x' package ...
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using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-11-09 10:54:33.75583 | timeMax: 2025-01-08 10:54:33.75642 | timeDiff: 5184000.00058985
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using 'ggh4x' package ...
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nrow dataFiltered(): 162
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-11-09 10:54:33.756 | timeMax: 2025-01-08 10:54:33.756 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 468
using 'ggh4x' package ...
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using 'ggh4x' package ...
NA
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using 'ggh4x' package ...
p3000/Proteomics/LUMOS_2/analytic_20250107/20250107_C3000_004_autoQC03dda.raw
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NA
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using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 162
using 'ggh4x' package ...
p3000/Proteomics/FUSION_2/chiawei_20250107/20250107_C3000_003_autoQC03dda_20250107174742.raw
NA
p3000/Proteomics/FUSION_2/chiawei_20250107/20250107_C3000_003_autoQC03dda.raw
p3000/Proteomics/FUSION_2/chiawei_20250107/20250107_C3000_003_autoQC03dda_20250107174742.raw
NA
nrow dataFiltered(): 468
using 'ggh4x' package ...
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using 'ggh4x' package ...
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20250107/20250107_C3000_003_autoQC03dda_20250107174742.raw
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using 'ggh4x' package ...
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using 'ggh4x' package ...
p3000/Proteomics/LUMOS_2/analytic_20250107/20250107_C3000_004_autoQC03dda.raw
NA
p3000/Proteomics/LUMOS_2/analytic_20250107/20250107_C3000_004_autoQC03dda.raw
p3000/Proteomics/LUMOS_2/analytic_20250107/20250107_C3000_004_autoQC03dda.raw
NA
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using 'ggh4x' package ...
nFacets: 1
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using 'ggh4x' package ...
nrow dataFiltered(): 468
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using 'ggh4x' package ...
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using 'ggh4x' package ...
p3000/Proteomics/FUSION_2/chiawei_20250107/20250107_C3000_003_autoQC03dda_20250107174742.raw
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using 'ggh4x' package ...
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NA
p3000/Proteomics/LUMOS_2/analytic_20250107/20250107_C3000_004_autoQC03dda.raw
p3000/Proteomics/LUMOS_2/analytic_20250107/20250107_C3000_004_autoQC03dda.raw
NA
p3000/Proteomics/LUMOS_2/analytic_20250107/20250107_C3000_005_autoQC03dia.raw
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1736333669902974000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
input timeRange: 7776000 | timeMin: 2024-11-09 15:50:22.693611 | timeMax: 2025-01-08 15:50:22.694237 | timeDiff: 5184000.00062513
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1040
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
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  112: <reactive:plotObj>
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    1: runApp
nrow dataFiltered(): 1040
using 'ggh4x' package ...
Warning: Removed 15 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-11-09 14:50:22.694 | timeMax: 2025-01-08 14:50:22.694 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1040
using 'ggh4x' package ...
Warning: Removed 15 rows containing missing values or values outside the scale
range (`geom_point()`).
NA
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
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  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 468
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
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  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 162
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
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   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 162
using 'ggh4x' package ...
nrow dataFiltered(): 468
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 780
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 198
using 'ggh4x' package ...
fn has changed to NA
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fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-11-09 15:56:21.222465 | timeMax: 2025-01-08 15:56:21.223087 | timeDiff: 5184000.0006218
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
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  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1360
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
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   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1360
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-11-09 14:56:21.222 | timeMax: 2025-01-08 14:56:21.223 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1360
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1736347819207219000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-11-09 16:06:11.346282 | timeMax: 2025-01-08 16:06:11.347363 | timeDiff: 5184000.00108123
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1360
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-11-09 15:06:11.346 | timeMax: 2025-01-08 15:06:11.347 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1360
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1360
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1736348177685587000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 780
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 198
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 198
using 'ggh4x' package ...
nrow dataFiltered(): 780
using 'ggh4x' package ...
NA
p3000/Proteomics/LUMOS_2/analytic_20250107/20250107_C3000_004_autoQC03dda.raw
NA
p3000/Proteomics/LUMOS_2/analytic_20250107/20250107_C3000_004_autoQC03dda.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1736348763485176000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-11-09 16:27:16.009963 | timeMax: 2025-01-08 16:27:16.010576 | timeDiff: 5184000.0006125
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 4
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 468
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 162
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 162
using 'ggh4x' package ...
nrow dataFiltered(): 468
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-11-09 15:27:16.00996 | timeMax: 2025-01-08 15:27:16.01058 | timeDiff: 5184000.00062013
nFacets: 4
nrow dataFiltered(): 468
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 162
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-11-09 15:27:16.01 | timeMax: 2025-01-08 15:27:16.011 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 468
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 162
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 780
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 198
using 'ggh4x' package ...
NA
p3000/Proteomics/LUMOS_2/analytic_20250107/20250107_C3000_004_autoQC03dda.raw
p3000/Proteomics/LUMOS_2/analytic_20250107/20250107_C3000_004_autoQC03dda.raw
nFacets: 0
nrow dataFiltered(): 0
nFacets: 1
nrow dataFiltered(): 0
Warning: Error in graphics::plot.new: figure margins too large
  104: graphics::plot.new
  101: startPNG
  100: plotPNG
   99: resizeSavedPlot
   97: func
   95: f
   94: Reduce
   85: do
   84: hybrid_chain
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  104: graphics::plot.new
  101: startPNG
  100: plotPNG
   99: resizeSavedPlot
   97: func
   95: f
   94: Reduce
   85: do
   84: hybrid_chain
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
input timeRange: 15552000 | timeMin: 2024-11-09 15:27:16.01 | timeMax: 2025-01-08 16:27:49.163153 | timeDiff: 5184033.15315294
nFacets: 0
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nFacets: 1
nrow dataFiltered(): 0
input timeRange: 15552000 | timeMin: 2024-11-09 15:27:16.01 | timeMax: 2025-01-08 15:27:49.163 | timeDiff: 5184033.15300012
nFacets: 0
nFacets: 1
nrow dataFiltered(): 0
input timeRange: 15552000 | timeMin: 2024-07-12 15:27:49.92817 | timeMax: 2025-01-08 15:27:49.163 | timeDiff: 15551999.2348301
nFacets: 4
nFacets: 1
nrow dataFiltered(): 630
using 'ggh4x' package ...
input timeRange: 15552000 | timeMin: 2024-07-12 18:28:02.761221 | timeMax: 2025-01-08 15:27:49.163 | timeDiff: 15548386.4017794
nrow dataFiltered(): 598
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 598
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 630
using 'ggh4x' package ...
input timeRange: 15552000 | timeMin: 2024-07-12 16:28:02.761 | timeMax: 2025-01-08 15:27:49.163 | timeDiff: 15548386.4020002
p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241011_04_autoQC03dda_from_scratch.raw
p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240930_04_autoQC03dda_flex_new_Quad.raw
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1736350032355520000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-11-09 21:27:18.151612 | timeMax: 2025-01-08 21:27:18.152194 | timeDiff: 5184000.00058126
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 0
input timeRange: 7776000 | timeMin: 2024-11-09 20:27:18.152 | timeMax: 2025-01-08 20:27:18.152 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 0
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1736322954965864000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 648
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 648
using 'ggh4x' package ...