Listening on http://127.0.0.1:39323 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid Request started from user spfammatter Bfabric query: workflow containerid = 31 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl, : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#122] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#132] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 31423 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 2957 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2957 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 2957 Selected workflows ids: 2971 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2957 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 2971 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 2957 Selected workflows ids: 2971 Selected workflows ids: 2985 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2957 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 2971 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 2985 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 2957 Selected workflows ids: 2971 Selected workflows ids: 2985 Selected workflows ids: 2986 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2957 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 2971 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 2985 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 2986 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl, : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#186] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#221] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#219] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid Bfabric query: workflow containerid = 31423 In function read_templatefile Bfabric query: dataset id Selected workflows ids: 2957 Selected workflows ids: 2971 Selected workflows ids: 2985 Selected workflows ids: 2986 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2957 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 2971 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 2985 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 2986 workflowtemplate step id 259 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: 2957 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2957 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 2957 Selected workflows ids: 2971 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2957 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 2971 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 2957 Selected workflows ids: 2971 Selected workflows ids: 2985 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2957 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 2971 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 2985 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 2957 Selected workflows ids: 2971 Selected workflows ids: 2985 Selected workflows ids: 2986 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2957 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 2971 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 2985 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 2986 workflowtemplate step id 259 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 2957 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2971 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2985 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2986 workflowtemplate step id 259 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-31423.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 2957 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2971 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2985 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2986 workflowtemplate step id 259 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-31423.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 2957 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2971 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2985 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2986 workflowtemplate step id 259 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-31423.pdf bfabricUpload