Listening on http://127.0.0.1:41103 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid Request started from user tobiasko Bfabric query: workflow containerid = 31303 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 2827 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2827 workflowtemplate step id 239 workflowtemplate step id 225 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 2827 Selected workflows ids: 2844 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2827 workflowtemplate step id 239 workflowtemplate step id 225 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 2844 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 2827 Selected workflows ids: 2844 Selected workflows ids: 2865 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2827 workflowtemplate step id 239 workflowtemplate step id 225 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 2844 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 2865 workflowtemplate step id 273 workflowtemplate step id 274 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 2827 workflowtemplate step id 239 workflowtemplate step id 225 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2844 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2865 workflowtemplate step id 273 workflowtemplate step id 274 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-31303.pdf bfabricUpload saving 'login and webservicepassword' ... In function read_workflowid Request started from user tobiasko Bfabric query: workflow containerid = 31339 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 2842 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2842 workflowtemplate step id 239 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 2842 Selected workflows ids: 2843 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2842 workflowtemplate step id 239 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 2843 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 2842 Selected workflows ids: 2843 Selected workflows ids: 2856 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2842 workflowtemplate step id 239 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 2843 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 2856 workflowtemplate step id 274 workflowtemplate step id 273 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 2842 Selected workflows ids: 2843 Selected workflows ids: 2856 Selected workflows ids: 2863 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2842 workflowtemplate step id 239 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 2843 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 2856 workflowtemplate step id 274 workflowtemplate step id 273 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 2863 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 257 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 2842 workflowtemplate step id 239 workflowtemplate step id 227 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2843 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2856 workflowtemplate step id 274 workflowtemplate step id 273 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2863 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 257 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-31339.pdf bfabricUpload saving 'login and webservicepassword' ... In function read_workflowid Request started from user tobiasko Bfabric query: workflow containerid = 31424 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 3048 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3048 workflowtemplate step id 239 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 3048 Selected workflows ids: 3049 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3048 workflowtemplate step id 239 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3049 workflowtemplate step id 246 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 3048 Selected workflows ids: 3049 Selected workflows ids: 3067 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3048 workflowtemplate step id 239 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3049 workflowtemplate step id 246 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3067 workflowtemplate step id 252 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 3048 workflowtemplate step id 239 workflowtemplate step id 227 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3049 workflowtemplate step id 246 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3067 workflowtemplate step id 252 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-31424.pdf bfabricUpload In function read_workflowid Bfabric query: workflow containerid = 31628 In function read_templatefile Bfabric query: dataset id Selected workflows ids: 3048 Selected workflows ids: 3049 Selected workflows ids: 3067 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3048 workflowtemplate step id 239 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3049 workflowtemplate step id 246 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3067 workflowtemplate step id 252 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_workflowid Bfabric query: workflow containerid = 31628 In function read_templatefile Bfabric query: dataset id Selected workflows ids: 3072 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3072 workflowtemplate step id 239 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 3072 Selected workflows ids: 3073 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3072 workflowtemplate step id 239 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3073 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 3072 Selected workflows ids: 3073 Selected workflows ids: 3074 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3072 workflowtemplate step id 239 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3073 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3074 workflowtemplate step id 274 workflowtemplate step id 274 workflowtemplate step id 273 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 3072 workflowtemplate step id 239 workflowtemplate step id 227 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3073 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3074 workflowtemplate step id 274 workflowtemplate step id 274 workflowtemplate step id 273 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-31628.pdf bfabricUpload saving 'login and webservicepassword' ... In function read_workflowid Request started from user tobiasko Bfabric query: workflow containerid = 31567 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 3068 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3068 workflowtemplate step id 239 workflowtemplate step id 228 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 3068 Selected workflows ids: 3069 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3068 workflowtemplate step id 239 workflowtemplate step id 228 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3069 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 3068 Selected workflows ids: 3069 Selected workflows ids: 3070 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3068 workflowtemplate step id 239 workflowtemplate step id 228 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3069 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3070 workflowtemplate step id 273 workflowtemplate step id 274 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 3068 workflowtemplate step id 239 workflowtemplate step id 228 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3069 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3070 workflowtemplate step id 273 workflowtemplate step id 274 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-31567.pdf bfabricUpload Execution halted