Listening on http://127.0.0.1:42187 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Warning: Error in server: attempt to apply non-function 38: server [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#20] 1: runApp Error in server(...) : attempt to apply non-function Warning: Error in bf$posturl: attempt to apply non-function 38: server [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#20] 1: runApp Error in bf$posturl() : attempt to apply non-function Warning: Error in bf$posturl: attempt to apply non-function 38: server [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#20] 1: runApp Error in bf$posturl() : attempt to apply non-function Warning: Error in server: attempt to apply non-function 38: server [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#27] 1: runApp Error in server(...) : attempt to apply non-function Warning: Error in bf$posturl: attempt to apply non-function 38: server [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#27] 1: runApp Error in bf$posturl() : attempt to apply non-function saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5002/. Request started from user mderrico Bfabric query: workflow containerid = 3000 saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5002/. Request started from user cfortes Bfabric query: workflow containerid = 31 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. In function read_workflowid Bfabric query: workflow containerid = 31781 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 3209 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3209 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 3209 Selected workflows ids: 3210 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3209 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3210 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5002/. Request started from user cfortes Bfabric query: workflow containerid = 31781 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 3209 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3209 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 3209 Selected workflows ids: 3210 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3209 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3210 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 3209 Selected workflows ids: 3210 Selected workflows ids: 3255 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3209 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3210 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3255 workflowtemplate step id 248 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 3209 Selected workflows ids: 3210 Selected workflows ids: 3255 Selected workflows ids: 3256 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3209 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3210 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3255 workflowtemplate step id 248 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 3256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 3209 workflowtemplate step id 230 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3210 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3255 workflowtemplate step id 248 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3256 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-31781.pdf bfabricUpload saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user mderrico Bfabric query: workflow containerid = 3000 saving 'login and webservicepassword' ... Warning: Error in rective: could not find function "rective" 38: server [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#28] 1: runApp Error in rective({ : could not find function "rective" Warning: Error in rective: could not find function "rective" 38: server [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#28] 1: runApp Error in rective({ : could not find function "rective" saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user mderrico Bfabric query: workflow containerid = 3000 saving 'login and webservicepassword' ... Execution halted