Listening on http://127.0.0.1:34941 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user spfammatter Bfabric query: workflow containerid = 3066 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 30666 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 2743 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2743 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 236 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 2743 Selected workflows ids: 2754 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2743 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 236 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 2754 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 2743 Selected workflows ids: 2754 Selected workflows ids: 2760 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2743 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 236 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 2754 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 2760 workflowtemplate step id 253 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 253 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 2743 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 236 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2754 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2760 workflowtemplate step id 253 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 253 workflowtemplate step id 254 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-30666.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 2743 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 236 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2754 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 2760 workflowtemplate step id 253 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 253 workflowtemplate step id 254 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-30666.pdf bfabricUpload Execution halted