Listening on http://127.0.0.1:34183 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user spfammatter Bfabric query: workflow containerid = 31969 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 3402 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3402 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 3402 Selected workflows ids: 3404 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3402 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3404 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 3402 Selected workflows ids: 3404 Selected workflows ids: 3429 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3402 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3404 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3429 workflowtemplate step id 248 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 3402 Selected workflows ids: 3404 Selected workflows ids: 3429 Selected workflows ids: 3436 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3402 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3404 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3429 workflowtemplate step id 248 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 3436 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 3402 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3404 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3429 workflowtemplate step id 248 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3436 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-31969.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 3402 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3404 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3429 workflowtemplate step id 248 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3436 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-31969.pdf bfabricUpload Execution halted