Listening on http://127.0.0.1:42175 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user tobiasko Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 31773 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 3279 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3279 workflowtemplate step id 239 workflowtemplate step id 228 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 3279 Selected workflows ids: 3280 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3279 workflowtemplate step id 239 workflowtemplate step id 228 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3280 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 3279 Selected workflows ids: 3280 Selected workflows ids: 3285 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3279 workflowtemplate step id 239 workflowtemplate step id 228 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3280 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3285 workflowtemplate step id 274 workflowtemplate step id 273 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 3279 Selected workflows ids: 3280 Selected workflows ids: 3285 Selected workflows ids: 3286 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3279 workflowtemplate step id 239 workflowtemplate step id 228 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3280 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3285 workflowtemplate step id 274 workflowtemplate step id 273 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 3286 workflowtemplate step id 257 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 3279 workflowtemplate step id 239 workflowtemplate step id 228 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3280 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3285 workflowtemplate step id 274 workflowtemplate step id 273 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3286 workflowtemplate step id 257 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-31773.pdf bfabricUpload Warning in value[[3L]](cond) : Error decrypting field. (#999, 'error:0407109F:rsa routines:RSA_padding_check_PKCS1_type_2:pkcs decoding error') Passing through unaltered. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user spfammatter Bfabric query: workflow containerid = 32085 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 3454 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3454 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 3454 Selected workflows ids: 3458 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3454 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3458 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 3454 Selected workflows ids: 3458 Selected workflows ids: 3464 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3454 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3458 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3464 workflowtemplate step id 250 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 3454 Selected workflows ids: 3458 Selected workflows ids: 3464 Selected workflows ids: 3465 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3454 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3458 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3464 workflowtemplate step id 250 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 3465 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 3454 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3458 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3464 workflowtemplate step id 250 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3465 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-32085.pdf bfabricUpload bfabricUpload bfabricUpload bfabricUpload bfabricUpload bfabricUpload bfabricUpload bfabricUpload bfabricUpload bfabricUpload In function read_workflowid Bfabric query: workflow containerid = 32079 In function read_templatefile Bfabric query: dataset id Selected workflows ids: 3279 Selected workflows ids: 3280 Selected workflows ids: 3285 Selected workflows ids: 3286 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3279 workflowtemplate step id 239 workflowtemplate step id 228 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3280 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3285 workflowtemplate step id 274 workflowtemplate step id 273 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 3286 workflowtemplate step id 257 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 3453 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3453 workflowtemplate step id 239 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 3453 Selected workflows ids: 3455 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3453 workflowtemplate step id 239 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3455 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 3453 Selected workflows ids: 3455 Selected workflows ids: 3463 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3453 workflowtemplate step id 239 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3455 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3463 workflowtemplate step id 274 workflowtemplate step id 273 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 3453 workflowtemplate step id 239 workflowtemplate step id 227 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3455 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3463 workflowtemplate step id 274 workflowtemplate step id 273 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-32079.pdf bfabricUpload Warning in value[[3L]](cond) : Error decrypting field. (#999, 'error:0407109F:rsa routines:RSA_padding_check_PKCS1_type_2:pkcs decoding error') Passing through unaltered. saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 32084 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 3457 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3457 workflowtemplate step id 239 workflowtemplate step id 240 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 3457 Selected workflows ids: 3460 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3457 workflowtemplate step id 239 workflowtemplate step id 240 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3460 workflowtemplate step id 245 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 3457 workflowtemplate step id 239 workflowtemplate step id 240 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3460 workflowtemplate step id 245 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-32084.pdf bfabricUpload saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user spfammatter Bfabric query: workflow containerid = 30 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 32019 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 3405 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3405 workflowtemplate step id 240 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 3405 Selected workflows ids: 3438 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3405 workflowtemplate step id 240 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3438 workflowtemplate step id 245 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 3405 Selected workflows ids: 3438 Selected workflows ids: 3449 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3405 workflowtemplate step id 240 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3438 workflowtemplate step id 245 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3449 workflowtemplate step id 270 workflowtemplate step id 248 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 3405 Selected workflows ids: 3438 Selected workflows ids: 3449 Selected workflows ids: 3471 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3405 workflowtemplate step id 240 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3438 workflowtemplate step id 245 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3449 workflowtemplate step id 270 workflowtemplate step id 248 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 3471 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 3405 workflowtemplate step id 240 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3438 workflowtemplate step id 245 workflowtemplate step id 266 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3449 workflowtemplate step id 270 workflowtemplate step id 248 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3471 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-32019.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 3405 workflowtemplate step id 240 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3438 workflowtemplate step id 245 workflowtemplate step id 266 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3449 workflowtemplate step id 270 workflowtemplate step id 248 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3471 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-32019.pdf bfabricUpload In function read_workflowid Bfabric query: workflow containerid = 32084 In function read_templatefile Bfabric query: dataset id Selected workflows ids: 3405 Selected workflows ids: 3438 Selected workflows ids: 3449 Selected workflows ids: 3471 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3405 workflowtemplate step id 240 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3438 workflowtemplate step id 245 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3449 workflowtemplate step id 270 workflowtemplate step id 248 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 3471 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 3457 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3457 workflowtemplate step id 239 workflowtemplate step id 240 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 3457 Selected workflows ids: 3460 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3457 workflowtemplate step id 239 workflowtemplate step id 240 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3460 workflowtemplate step id 245 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 3457 Selected workflows ids: 3460 Selected workflows ids: 3476 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3457 workflowtemplate step id 239 workflowtemplate step id 240 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3460 workflowtemplate step id 245 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3476 workflowtemplate step id 260 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 3457 workflowtemplate step id 239 workflowtemplate step id 240 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3460 workflowtemplate step id 245 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3476 workflowtemplate step id 260 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-32084.pdf generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 3457 workflowtemplate step id 239 workflowtemplate step id 240 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3460 workflowtemplate step id 245 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3476 workflowtemplate step id 260 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-32084.pdf bfabricUpload Execution halted