Listening on http://127.0.0.1:38875 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user antdit Bfabric query: workflow containerid = 32097 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 3486 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3486 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 233 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 3486 Selected workflows ids: 3500 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3486 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 233 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3500 workflowtemplate step id 245 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 3486 Selected workflows ids: 3500 Selected workflows ids: 3512 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3486 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 233 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3500 workflowtemplate step id 245 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3512 workflowtemplate step id 251 workflowtemplate step id 248 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 3486 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 233 workflowtemplate step id 239 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3500 workflowtemplate step id 245 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3512 workflowtemplate step id 251 workflowtemplate step id 248 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-32097.pdf generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 3486 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 233 workflowtemplate step id 239 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3500 workflowtemplate step id 245 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3512 workflowtemplate step id 251 workflowtemplate step id 248 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-32097.pdf bfabricUpload Execution halted