Listening on http://127.0.0.1:35369
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

saving 'login and webservicepassword' ...
In function read_workflowid
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
In function read_workflowid
Request started from user spfammatter
Bfabric query: workflow containerid = 32256
saving 'login and webservicepassword' ...
In function read_templatefile
Bfabric query: dataset id
Selected workflows ids: 3617

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3617
workflowtemplate step id  239 
workflowtemplate step id  240 
workflowtemplate step id  228 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 57
workflowtemplate name: Proteomics Sample Preparation

Selected workflows ids: 3617
Selected workflows ids: 3619

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3617
workflowtemplate step id  239 
workflowtemplate step id  240 
workflowtemplate step id  228 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 57
workflowtemplate name: Proteomics Sample Preparation

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3619
workflowtemplate step id  269 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 58
workflowtemplate name: Proteomics Data acquisition

Selected workflows ids: 3617
Selected workflows ids: 3619
Selected workflows ids: 3657

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3617
workflowtemplate step id  239 
workflowtemplate step id  240 
workflowtemplate step id  228 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 57
workflowtemplate name: Proteomics Sample Preparation

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3619
workflowtemplate step id  269 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 58
workflowtemplate name: Proteomics Data acquisition

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3657
workflowtemplate step id  249 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 59
workflowtemplate name: Proteomics Data analysis

Selected workflows ids: 3617
Selected workflows ids: 3619
Selected workflows ids: 3657
Selected workflows ids: 3658

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3617
workflowtemplate step id  239 
workflowtemplate step id  240 
workflowtemplate step id  228 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 57
workflowtemplate name: Proteomics Sample Preparation

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3619
workflowtemplate step id  269 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 58
workflowtemplate name: Proteomics Data acquisition

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3657
workflowtemplate step id  249 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 59
workflowtemplate name: Proteomics Data analysis

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3658
workflowtemplate step id  261 
workflowtemplate step id  256 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 60
workflowtemplate name: Proteomics Results

saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
generateReport
In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3617
workflowtemplate step id  239 
workflowtemplate step id  240 
workflowtemplate step id  228 

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3619
workflowtemplate step id  269 

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3657
workflowtemplate step id  249 

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3658
workflowtemplate step id  261 
workflowtemplate step id  256 



processing file: report.Rmd
output file: report.knit.md


Output created: fgcz_order_report-32256.pdf
bfabricUpload


Execution halted