Listening on http://127.0.0.1:33461
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

saving 'login and webservicepassword' ...
In function read_workflowid
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Request started from user wuethrich
Bfabric query: workflow containerid = 32388
saving 'login and webservicepassword' ...
In function read_templatefile
Bfabric query: dataset id
Selected workflows ids: 3809

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3809
workflowtemplate step id  277 
workflowtemplate step id  281 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 61
workflowtemplate name: Analysis procedure: Purified Biomolecules

saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
In function read_workflowid
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Request started from user wuethrich
Bfabric query: workflow containerid = 3
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  121: append
  120: <reactive:read_workflowid> [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125]
  104: read_workflowid
   97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135]
   96: func
   83: renderFunc
   82: output$workflow
    1: runApp
In function read_workflowid
Bfabric query: workflow containerid = 32
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  121: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125]
  120: <reactive:read_workflowid> [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125]
  104: read_workflowid
   97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135]
   96: func
   83: renderFunc
   82: output$workflow
    1: runApp
In function read_workflowid
Bfabric query: workflow containerid = 324
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  121: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125]
  120: <reactive:read_workflowid> [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125]
  104: read_workflowid
   97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135]
   96: func
   83: renderFunc
   82: output$workflow
    1: runApp
In function read_workflowid
Bfabric query: workflow containerid = 32428
saving 'login and webservicepassword' ...
In function read_templatefile
Bfabric query: dataset id
Selected workflows ids: 3754

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3754
workflowtemplate step id  247 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 59
workflowtemplate name: Proteomics Data analysis

Selected workflows ids: 3754
Selected workflows ids: 3756

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3754
workflowtemplate step id  247 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 59
workflowtemplate name: Proteomics Data analysis

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3756
workflowtemplate step id  256 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 60
workflowtemplate name: Proteomics Results

Selected workflows ids: 3754
Selected workflows ids: 3756
Selected workflows ids: 3757

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3754
workflowtemplate step id  247 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 59
workflowtemplate name: Proteomics Data analysis

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3756
workflowtemplate step id  256 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 60
workflowtemplate name: Proteomics Results

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3757
workflowtemplate step id  231 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 57
workflowtemplate name: Proteomics Sample Preparation

saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
generateReport
In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3809
workflowtemplate step id  277 
workflowtemplate step id  281 



processing file: report.Rmd
output file: report.knit.md


Output created: fgcz_order_report-32388.pdf
bfabricUpload
saving 'login and webservicepassword' ...
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
In function read_workflowid
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Request started from user lkunz
Bfabric query: workflow containerid = 3239
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  121: append
  120: <reactive:read_workflowid> [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125]
  104: read_workflowid
   97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135]
   96: func
   83: renderFunc
   82: output$workflow
    1: runApp
In function read_workflowid
Bfabric query: workflow containerid = 32392
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
In function read_templatefile
Bfabric query: dataset id
Selected workflows ids: 3796

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 3796
workflowtemplate step id  239 
workflowtemplate step id  232 
workflowtemplate step id  225 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 57
workflowtemplate name: Proteomics Sample Preparation

Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.


Execution halted