Listening on http://127.0.0.1:45439 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user schesnov Bfabric query: workflow containerid = 32 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 327 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 32799 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 4101 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4101 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user antdit Bfabric query: workflow containerid = 32700 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 4034 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4034 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user antdit Bfabric query: workflow containerid = 32700 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 4034 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4034 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 4034 Selected workflows ids: 4102 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4034 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 4102 workflowtemplate step id 245 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 4034 Selected workflows ids: 4102 Selected workflows ids: 4103 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4034 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 4102 workflowtemplate step id 245 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 4103 workflowtemplate step id 249 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 4034 Selected workflows ids: 4102 Selected workflows ids: 4103 Selected workflows ids: 4104 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4034 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 4102 workflowtemplate step id 245 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 4103 workflowtemplate step id 249 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 4104 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 4101 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 275 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-32799.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 4034 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4102 workflowtemplate step id 245 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4103 workflowtemplate step id 249 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4104 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-32700.pdf generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 4034 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4102 workflowtemplate step id 245 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4103 workflowtemplate step id 249 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4104 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-32700.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 4034 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4102 workflowtemplate step id 245 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4103 workflowtemplate step id 249 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4104 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-32700.pdf bfabricUpload Execution halted