Listening on http://127.0.0.1:46703 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user tobiasko Bfabric query: workflow containerid = 33 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 33108 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 4376 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4376 workflowtemplate step id 239 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 4376 Selected workflows ids: 4389 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4376 workflowtemplate step id 239 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 4389 workflowtemplate step id 266 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 4376 Selected workflows ids: 4389 Selected workflows ids: 4392 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4376 workflowtemplate step id 239 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 4389 workflowtemplate step id 266 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 4392 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 274 workflowtemplate step id 273 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 4376 Selected workflows ids: 4389 Selected workflows ids: 4392 Selected workflows ids: 4395 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4376 workflowtemplate step id 239 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 4389 workflowtemplate step id 266 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 4392 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 274 workflowtemplate step id 273 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 4395 workflowtemplate step id 257 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 4376 workflowtemplate step id 239 workflowtemplate step id 227 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4389 workflowtemplate step id 266 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4392 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 274 workflowtemplate step id 273 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4395 workflowtemplate step id 257 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-33108.pdf bfabricUpload Execution halted