Listening on http://127.0.0.1:44963 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 33075 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 4366 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4366 workflowtemplate step id 239 workflowtemplate step id 236 workflowtemplate step id 238 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 4366 Selected workflows ids: 4403 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4366 workflowtemplate step id 239 workflowtemplate step id 236 workflowtemplate step id 238 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 4403 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 4366 Selected workflows ids: 4403 Selected workflows ids: 4493 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4366 workflowtemplate step id 239 workflowtemplate step id 236 workflowtemplate step id 238 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 4403 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 4493 workflowtemplate step id 285 workflowtemplate step id 270 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 4366 Selected workflows ids: 4403 Selected workflows ids: 4493 Selected workflows ids: 4494 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4366 workflowtemplate step id 239 workflowtemplate step id 236 workflowtemplate step id 238 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 4403 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 4493 workflowtemplate step id 285 workflowtemplate step id 270 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 4494 workflowtemplate step id 259 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 4366 workflowtemplate step id 239 workflowtemplate step id 236 workflowtemplate step id 238 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 workflowtemplate step id 239 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4403 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4493 workflowtemplate step id 285 workflowtemplate step id 270 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4494 workflowtemplate step id 259 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-33075.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 4366 workflowtemplate step id 239 workflowtemplate step id 236 workflowtemplate step id 238 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 workflowtemplate step id 239 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4403 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4493 workflowtemplate step id 285 workflowtemplate step id 270 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4494 workflowtemplate step id 259 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-33075.pdf bfabricUpload Execution halted