Listening on http://127.0.0.1:39753 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user schesnov Bfabric query: workflow containerid = 33305 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 4536 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4536 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 4536 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-33305.pdf bfabricUpload saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user antdit Bfabric query: workflow containerid = 32538 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 3942 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3942 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 225 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 3942 Selected workflows ids: 3978 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3942 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 225 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3978 workflowtemplate step id 243 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 3942 Selected workflows ids: 3978 Selected workflows ids: 3983 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3942 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 225 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3978 workflowtemplate step id 243 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3983 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 3942 Selected workflows ids: 3978 Selected workflows ids: 3983 Selected workflows ids: 4110 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3942 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 225 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3978 workflowtemplate step id 243 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3983 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 4110 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 3942 Selected workflows ids: 3978 Selected workflows ids: 3983 Selected workflows ids: 4110 Selected workflows ids: 4111 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3942 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 225 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3978 workflowtemplate step id 243 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3983 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 4110 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 4111 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 3942 Selected workflows ids: 3978 Selected workflows ids: 3983 Selected workflows ids: 4110 Selected workflows ids: 4111 Selected workflows ids: 4122 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3942 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 225 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3978 workflowtemplate step id 243 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3983 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 4110 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 4111 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 4122 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... Selected workflows ids: 3942 Selected workflows ids: 3978 Selected workflows ids: 3983 Selected workflows ids: 4110 Selected workflows ids: 4111 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3942 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 225 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3978 workflowtemplate step id 243 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3983 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 4110 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 4111 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 3942 Selected workflows ids: 3978 Selected workflows ids: 3983 Selected workflows ids: 4110 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3942 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 225 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3978 workflowtemplate step id 243 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3983 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 4110 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 3942 Selected workflows ids: 3978 Selected workflows ids: 3983 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3942 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 225 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 3978 workflowtemplate step id 243 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 3983 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 3942 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 225 workflowtemplate step id 239 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3978 workflowtemplate step id 243 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3983 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-32538.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 3942 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 225 workflowtemplate step id 239 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3978 workflowtemplate step id 243 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 3983 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-32538.pdf bfabricUpload Execution halted