Listening on http://127.0.0.1:40937 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 33662 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 4926 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4926 workflowtemplate step id 272 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 4926 Selected workflows ids: 4927 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4926 workflowtemplate step id 272 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 4927 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 4926 Selected workflows ids: 4927 Selected workflows ids: 4967 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4926 workflowtemplate step id 272 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 4927 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 4967 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 4926 Selected workflows ids: 4927 Selected workflows ids: 4967 Selected workflows ids: 4971 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4926 workflowtemplate step id 272 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 4927 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 4967 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 4971 workflowtemplate step id 258 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 4926 workflowtemplate step id 272 workflowtemplate step id 239 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4927 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4967 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4971 workflowtemplate step id 258 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-33662.pdf bfabricUpload Execution halted