Listening on http://127.0.0.1:46599 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user spfammatter Bfabric query: workflow containerid = 33726 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 5037 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5037 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 5037 Selected workflows ids: 5038 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5037 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5038 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 5037 Selected workflows ids: 5038 Selected workflows ids: 5092 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5037 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5038 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5092 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 5037 Selected workflows ids: 5038 Selected workflows ids: 5092 Selected workflows ids: 5095 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5037 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5038 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5092 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5095 workflowtemplate step id 290 workflowtemplate step id 259 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5037 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5038 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5092 workflowtemplate step id 254 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5095 workflowtemplate step id 290 workflowtemplate step id 259 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-33726.pdf generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5037 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5038 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5092 workflowtemplate step id 254 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5095 workflowtemplate step id 290 workflowtemplate step id 259 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-33726.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5037 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5038 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5092 workflowtemplate step id 254 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5095 workflowtemplate step id 290 workflowtemplate step id 259 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-33726.pdf bfabricUpload Execution halted