Listening on http://127.0.0.1:33547 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. In function read_workflowid Request started from user chiawei Bfabric query: workflow containerid = 34014 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 5151 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5151 workflowtemplate step id 226 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 5151 Selected workflows ids: 5152 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5151 workflowtemplate step id 226 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5152 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 5151 Selected workflows ids: 5152 Selected workflows ids: 5153 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5151 workflowtemplate step id 226 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5152 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5153 workflowtemplate step id 250 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 5151 Selected workflows ids: 5152 Selected workflows ids: 5153 Selected workflows ids: 5154 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5151 workflowtemplate step id 226 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5152 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5153 workflowtemplate step id 250 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5154 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... Selected workflows ids: 5151 Selected workflows ids: 5152 Selected workflows ids: 5153 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5151 workflowtemplate step id 226 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5152 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5153 workflowtemplate step id 250 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 5151 Selected workflows ids: 5152 Selected workflows ids: 5153 Selected workflows ids: 5154 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5151 workflowtemplate step id 226 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5152 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5153 workflowtemplate step id 250 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5154 workflowtemplate step id 260 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user spfammatter Bfabric query: workflow containerid = 34011 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 5147 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5147 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 5147 Selected workflows ids: 5155 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5147 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5155 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 5147 Selected workflows ids: 5155 Selected workflows ids: 5158 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5147 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5155 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5158 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 5147 Selected workflows ids: 5155 Selected workflows ids: 5158 Selected workflows ids: 5160 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5147 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5155 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5158 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5160 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5147 workflowtemplate step id 230 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5155 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5158 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5160 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-34011.pdf generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5147 workflowtemplate step id 230 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5155 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5158 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5160 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-34011.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5151 workflowtemplate step id 226 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5152 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5153 workflowtemplate step id 250 workflowtemplate step id 291 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5154 workflowtemplate step id 260 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-34014.pdf generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5151 workflowtemplate step id 226 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5152 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5153 workflowtemplate step id 250 workflowtemplate step id 291 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5154 workflowtemplate step id 260 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-34014.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5151 workflowtemplate step id 226 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5152 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5153 workflowtemplate step id 250 workflowtemplate step id 291 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5154 workflowtemplate step id 260 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-34014.pdf bfabricUpload Execution halted