Listening on http://127.0.0.1:40817 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 33994 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 5146 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5146 workflowtemplate step id 239 workflowtemplate step id 236 workflowtemplate step id 238 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 5146 Selected workflows ids: 5173 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5146 workflowtemplate step id 239 workflowtemplate step id 236 workflowtemplate step id 238 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5173 workflowtemplate step id 244 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 5146 Selected workflows ids: 5173 Selected workflows ids: 5228 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5146 workflowtemplate step id 239 workflowtemplate step id 236 workflowtemplate step id 238 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5173 workflowtemplate step id 244 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5228 workflowtemplate step id 285 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 5146 Selected workflows ids: 5173 Selected workflows ids: 5228 Selected workflows ids: 5235 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5146 workflowtemplate step id 239 workflowtemplate step id 236 workflowtemplate step id 238 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5173 workflowtemplate step id 244 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5228 workflowtemplate step id 285 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5235 workflowtemplate step id 259 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5146 workflowtemplate step id 239 workflowtemplate step id 236 workflowtemplate step id 238 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5173 workflowtemplate step id 244 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5228 workflowtemplate step id 285 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5235 workflowtemplate step id 259 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-33994.pdf bfabricUpload Execution halted