Listening on http://127.0.0.1:43039
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

saving 'login and webservicepassword' ...
In function read_workflowid
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Request started from user spfammatter
Bfabric query: workflow containerid = 34203
saving 'login and webservicepassword' ...
In function read_templatefile
Bfabric query: dataset id
Selected workflows ids: 5348

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 5348
workflowtemplate step id  239 
workflowtemplate step id  226 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 57
workflowtemplate name: Proteomics Sample Preparation

Selected workflows ids: 5348
Selected workflows ids: 5358

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 5348
workflowtemplate step id  239 
workflowtemplate step id  226 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 57
workflowtemplate name: Proteomics Sample Preparation

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 5358
workflowtemplate step id  245 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 58
workflowtemplate name: Proteomics Data acquisition

Selected workflows ids: 5348
Selected workflows ids: 5358
Selected workflows ids: 5366

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 5348
workflowtemplate step id  239 
workflowtemplate step id  226 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 57
workflowtemplate name: Proteomics Sample Preparation

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 5358
workflowtemplate step id  245 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 58
workflowtemplate name: Proteomics Data acquisition

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 5366
workflowtemplate step id  273 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 59
workflowtemplate name: Proteomics Data analysis

saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
generateReport
In function read_steptemplateid
Bfabric query: workflowstep workflowid = 5348
workflowtemplate step id  239 
workflowtemplate step id  226 

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 5358
workflowtemplate step id  245 

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 5366
workflowtemplate step id  273 



processing file: report.Rmd
output file: report.knit.md


Output created: fgcz_order_report-34203.pdf
bfabricUpload


Execution halted