Listening on http://127.0.0.1:34955 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user pgehrig Bfabric query: workflow containerid = 34 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 341 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 34167 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 5402 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5402 Selected workflows ids: 5403 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5402 Selected workflows ids: 5403 Selected workflows ids: 5413 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 169: append 168: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 152: read_steptemplateid(input$workflowids[[x]]) 150: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#278] 149: lapply 148: eventReactiveValueFunc [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#278] 104: report 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#343] 96: func 83: renderFunc 82: output$downloadReportButton 1: runApp saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user pgehrig Bfabric query: workflow containerid = 34 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 341 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 34167 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 5402 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5402 Selected workflows ids: 5403 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user pgehrig Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 34 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 341 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 34167 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 5402 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5402 Selected workflows ids: 5403 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5402 Selected workflows ids: 5403 Selected workflows ids: 5413 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... Selected workflows ids: 5402 Selected workflows ids: 5403 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5402 Selected workflows ids: 5403 Selected workflows ids: 5404 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5402 Selected workflows ids: 5403 Selected workflows ids: 5404 Selected workflows ids: 5413 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user pgehrig Bfabric query: workflow containerid = 34 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 341 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 34167 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 5402 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5402 Selected workflows ids: 5403 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5402 Selected workflows ids: 5403 Selected workflows ids: 5413 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... Selected workflows ids: 5402 Selected workflows ids: 5403 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user pgehrig Bfabric query: workflow containerid = 34 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 341 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 34167 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 5402 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... Selected workflows ids: 5403 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5403 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5402 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user pgehrig Bfabric query: workflow containerid = 32 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 329 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 32987 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 4257 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4257 workflowtemplate step id 239 workflowtemplate step id 228 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 4257 Selected workflows ids: 4400 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4257 workflowtemplate step id 239 workflowtemplate step id 228 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 4400 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 4257 Selected workflows ids: 4400 Selected workflows ids: 4401 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4257 workflowtemplate step id 239 workflowtemplate step id 228 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 4400 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 4401 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 4257 Selected workflows ids: 4400 Selected workflows ids: 4401 Selected workflows ids: 4409 In function read_steptemplateid Bfabric query: workflowstep workflowid = 4257 workflowtemplate step id 239 workflowtemplate step id 228 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 4400 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 4401 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = 4409 workflowtemplate step id 245 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user pgehrig Bfabric query: workflow containerid = 34 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 341 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 34167 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 5402 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5402 Selected workflows ids: 5403 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5402 Selected workflows ids: 5403 Selected workflows ids: 5413 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... Selected workflows ids: 5402 Selected workflows ids: 5403 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5402 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5403 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5403 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5404 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5404 workflowtemplate step id 249 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: 5404 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5404 workflowtemplate step id 249 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 5404 Selected workflows ids: 5402 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5404 workflowtemplate step id 249 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5404 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5404 workflowtemplate step id 249 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 5404 Selected workflows ids: 5413 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5404 workflowtemplate step id 249 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5413 workflowtemplate step id 274 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 5404 Selected workflows ids: 5413 Selected workflows ids: 5402 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5404 workflowtemplate step id 249 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5413 workflowtemplate step id 274 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... Selected workflows ids: 5404 Selected workflows ids: 5413 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5404 workflowtemplate step id 249 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5413 workflowtemplate step id 274 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 5404 Selected workflows ids: 5413 Selected workflows ids: 5403 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5404 workflowtemplate step id 249 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5413 workflowtemplate step id 274 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5403 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5404 Selected workflows ids: 5413 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5404 workflowtemplate step id 249 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5413 workflowtemplate step id 274 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 5404 Selected workflows ids: 5402 Selected workflows ids: 5413 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5404 workflowtemplate step id 249 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5404 Selected workflows ids: 5402 Selected workflows ids: 5403 Selected workflows ids: 5413 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5404 workflowtemplate step id 249 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5404 Selected workflows ids: 5402 Selected workflows ids: 5413 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5404 workflowtemplate step id 249 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 5404 Selected workflows ids: 5413 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5404 workflowtemplate step id 249 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5413 workflowtemplate step id 274 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 5404 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5404 workflowtemplate step id 249 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 5403 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5403 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user pgehrig Bfabric query: workflow containerid = 34 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 341 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 34167 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 5402 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 5402 Selected workflows ids: 5403 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5403 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 5402 Selected workflows ids: 5403 Selected workflows ids: 5413 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5403 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5413 workflowtemplate step id 274 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 5402 Selected workflows ids: 5403 Selected workflows ids: 5413 Selected workflows ids: 5414 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5403 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5413 workflowtemplate step id 274 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5414 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user spfammatter Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 34 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 34241 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 5376 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5376 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 5376 Selected workflows ids: 5385 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5376 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5385 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 5376 Selected workflows ids: 5385 Selected workflows ids: 5395 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5376 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5385 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5395 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 5376 Selected workflows ids: 5385 Selected workflows ids: 5395 Selected workflows ids: 5397 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5376 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5385 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5395 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5397 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5376 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5385 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5395 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5397 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-34241.pdf generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5376 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5385 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5395 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5397 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-34241.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5376 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5385 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5395 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5397 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-34241.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5402 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5403 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5413 workflowtemplate step id 274 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5414 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-34167.pdf bfabricUpload saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user wuethrich Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 34 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 341 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 34188 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 5415 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5415 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 5415 Selected workflows ids: 5416 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5415 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5416 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 5415 Selected workflows ids: 5416 Selected workflows ids: 5417 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5415 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5416 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5417 workflowtemplate step id 250 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 5415 Selected workflows ids: 5416 Selected workflows ids: 5417 Selected workflows ids: 5418 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5415 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5416 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5417 workflowtemplate step id 250 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5418 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5415 workflowtemplate step id 230 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5416 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5417 workflowtemplate step id 250 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5418 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-34188.pdf bfabricUpload Execution halted